Protein–RNA interactions for Protein: Q8VCB1

Ndc1, Nucleoporin NDC1, mousemouse

Known RBP Predictions only

Length 673 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1Q8VCB1 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC22.91■■□□□ 1.26
Ndc1Q8VCB1 Gm6345-201ENSMUST00000180378 1691 ntBASIC22.9■■□□□ 1.26
Ndc1Q8VCB1 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ndc1Q8VCB1 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ndc1Q8VCB1 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Ndc1Q8VCB1 Gm6206-201ENSMUST00000133472 2199 ntBASIC22.89■■□□□ 1.26
Ndc1Q8VCB1 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
Ndc1Q8VCB1 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC22.88■■□□□ 1.25
Ndc1Q8VCB1 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
Ndc1Q8VCB1 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Ndc1Q8VCB1 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ndc1Q8VCB1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Ndc1Q8VCB1 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Ndc1Q8VCB1 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Ndc1Q8VCB1 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22.86■■□□□ 1.25
Ndc1Q8VCB1 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.86■■□□□ 1.25
Ndc1Q8VCB1 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22.86■■□□□ 1.25
Ndc1Q8VCB1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Ndc1Q8VCB1 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Ndc1Q8VCB1 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.85■■□□□ 1.25
Ndc1Q8VCB1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
Ndc1Q8VCB1 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
Ndc1Q8VCB1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Ndc1Q8VCB1 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC22.82■■□□□ 1.24
Ndc1Q8VCB1 Zxda-201ENSMUST00000117281 2621 ntBASIC22.82■■□□□ 1.24
Ndc1Q8VCB1 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Ndc1Q8VCB1 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.81■■□□□ 1.24
Ndc1Q8VCB1 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC22.81■■□□□ 1.24
Ndc1Q8VCB1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Ndc1Q8VCB1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Ndc1Q8VCB1 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
Ndc1Q8VCB1 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Ndc1Q8VCB1 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Ndc1Q8VCB1 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Ndc1Q8VCB1 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Ndc1Q8VCB1 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Ndc1Q8VCB1 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC22.78■■□□□ 1.24
Ndc1Q8VCB1 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Ndc1Q8VCB1 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Ndc1Q8VCB1 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC22.77■■□□□ 1.24
Ndc1Q8VCB1 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
Ndc1Q8VCB1 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Ndc1Q8VCB1 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Ndc1Q8VCB1 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ndc1Q8VCB1 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
Ndc1Q8VCB1 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Ndc1Q8VCB1 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Ndc1Q8VCB1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Ndc1Q8VCB1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC22.72■■□□□ 1.23
Ndc1Q8VCB1 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Ndc1Q8VCB1 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Ndc1Q8VCB1 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Ndc1Q8VCB1 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Ndc1Q8VCB1 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22.71■■□□□ 1.23
Ndc1Q8VCB1 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Ndc1Q8VCB1 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Ndc1Q8VCB1 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Ndc1Q8VCB1 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Ndc1Q8VCB1 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
Ndc1Q8VCB1 Gm43445-201ENSMUST00000198564 2091 ntBASIC22.69■■□□□ 1.22
Ndc1Q8VCB1 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC22.67■■□□□ 1.22
Ndc1Q8VCB1 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Ndc1Q8VCB1 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22.66■■□□□ 1.22
Ndc1Q8VCB1 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Ndc1Q8VCB1 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Ndc1Q8VCB1 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Ndc1Q8VCB1 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22.64■■□□□ 1.21
Ndc1Q8VCB1 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22.64■■□□□ 1.21
Ndc1Q8VCB1 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Ndc1Q8VCB1 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Ndc1Q8VCB1 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Ndc1Q8VCB1 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
Ndc1Q8VCB1 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Ndc1Q8VCB1 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Ndc1Q8VCB1 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Ndc1Q8VCB1 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Ndc1Q8VCB1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Ndc1Q8VCB1 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Ndc1Q8VCB1 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Ndc1Q8VCB1 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Ndc1Q8VCB1 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
Ndc1Q8VCB1 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Ndc1Q8VCB1 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.58■■□□□ 1.21
Ndc1Q8VCB1 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 Gm7432-201ENSMUST00000210343 879 ntBASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Ndc1Q8VCB1 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Ndc1Q8VCB1 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ndc1Q8VCB1 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ndc1Q8VCB1 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC22.56■■□□□ 1.2
Ndc1Q8VCB1 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ndc1Q8VCB1 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
Ndc1Q8VCB1 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ndc1Q8VCB1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Ndc1Q8VCB1 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Ndc1Q8VCB1 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC22.55■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms