Protein–RNA interactions for Protein: Q8VCB1

Ndc1, Nucleoporin NDC1, mousemouse

Known RBP Predictions only

Length 673 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1Q8VCB1 Gm25239-201ENSMUST00000174915 86 ntBASIC35.82■■■■□ 3.32
Ndc1Q8VCB1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
Ndc1Q8VCB1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Ndc1Q8VCB1 Gm15042-201ENSMUST00000120212 883 ntBASIC31.33■■■□□ 2.61
Ndc1Q8VCB1 Gm24109-201ENSMUST00000175489 103 ntBASIC31.01■■■□□ 2.55
Ndc1Q8VCB1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Ndc1Q8VCB1 Gm15045-201ENSMUST00000117359 883 ntBASIC30.62■■■□□ 2.49
Ndc1Q8VCB1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ndc1Q8VCB1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Ndc1Q8VCB1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
Ndc1Q8VCB1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Ndc1Q8VCB1 Gm23366-201ENSMUST00000175022 89 ntBASIC29.92■■■□□ 2.38
Ndc1Q8VCB1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
Ndc1Q8VCB1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Ndc1Q8VCB1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Ndc1Q8VCB1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Ndc1Q8VCB1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29■■■□□ 2.23
Ndc1Q8VCB1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ndc1Q8VCB1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.94■■■□□ 2.22
Ndc1Q8VCB1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.91■■■□□ 2.22
Ndc1Q8VCB1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Ndc1Q8VCB1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.75■■■□□ 2.19
Ndc1Q8VCB1 Psd-208ENSMUST00000224556 2034 ntBASIC28.75■■■□□ 2.19
Ndc1Q8VCB1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC28.62■■■□□ 2.17
Ndc1Q8VCB1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
Ndc1Q8VCB1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Ndc1Q8VCB1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Ndc1Q8VCB1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
Ndc1Q8VCB1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Ndc1Q8VCB1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
Ndc1Q8VCB1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Ndc1Q8VCB1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.37■■■□□ 2.13
Ndc1Q8VCB1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Ndc1Q8VCB1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Ndc1Q8VCB1 Gm25238-201ENSMUST00000174914 89 ntBASIC28.26■■■□□ 2.11
Ndc1Q8VCB1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC28.24■■■□□ 2.11
Ndc1Q8VCB1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
Ndc1Q8VCB1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Ndc1Q8VCB1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Ndc1Q8VCB1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC27.87■■■□□ 2.05
Ndc1Q8VCB1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC27.7■■■□□ 2.02
Ndc1Q8VCB1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Ndc1Q8VCB1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Ndc1Q8VCB1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.02
Ndc1Q8VCB1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC27.59■■■□□ 2.01
Ndc1Q8VCB1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Ndc1Q8VCB1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Ndc1Q8VCB1 Gm27325-201ENSMUST00000175467 74 ntBASIC27.44■■□□□ 1.98
Ndc1Q8VCB1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ndc1Q8VCB1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Ndc1Q8VCB1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC27.37■■□□□ 1.97
Ndc1Q8VCB1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.36■■□□□ 1.97
Ndc1Q8VCB1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
Ndc1Q8VCB1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.26■■□□□ 1.95
Ndc1Q8VCB1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
Ndc1Q8VCB1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC27.16■■□□□ 1.94
Ndc1Q8VCB1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Ndc1Q8VCB1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC27.08■■□□□ 1.93
Ndc1Q8VCB1 Gm25262-201ENSMUST00000174934 133 ntBASIC27.07■■□□□ 1.92
Ndc1Q8VCB1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Ndc1Q8VCB1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Ndc1Q8VCB1 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ndc1Q8VCB1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
Ndc1Q8VCB1 Rab21-202ENSMUST00000218831 843 ntBASIC26.94■■□□□ 1.9
Ndc1Q8VCB1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Ndc1Q8VCB1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ndc1Q8VCB1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC26.85■■□□□ 1.89
Ndc1Q8VCB1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC26.83■■□□□ 1.89
Ndc1Q8VCB1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Ndc1Q8VCB1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ndc1Q8VCB1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Ndc1Q8VCB1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ndc1Q8VCB1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.66■■□□□ 1.86
Ndc1Q8VCB1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
Ndc1Q8VCB1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Ndc1Q8VCB1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Ndc1Q8VCB1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ndc1Q8VCB1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ndc1Q8VCB1 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC26.6■■□□□ 1.85
Ndc1Q8VCB1 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.59■■□□□ 1.85
Ndc1Q8VCB1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ndc1Q8VCB1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC26.57■■□□□ 1.84
Ndc1Q8VCB1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Ndc1Q8VCB1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Ndc1Q8VCB1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ndc1Q8VCB1 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC26.54■■□□□ 1.84
Ndc1Q8VCB1 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
Ndc1Q8VCB1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ndc1Q8VCB1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ndc1Q8VCB1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Ndc1Q8VCB1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ndc1Q8VCB1 Gm26115-201ENSMUST00000175605 87 ntBASIC26.38■■□□□ 1.81
Ndc1Q8VCB1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC26.35■■□□□ 1.81
Ndc1Q8VCB1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC26.34■■□□□ 1.81
Ndc1Q8VCB1 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ndc1Q8VCB1 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ndc1Q8VCB1 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.31■■□□□ 1.8
Ndc1Q8VCB1 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ndc1Q8VCB1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ndc1Q8VCB1 Gm8109-201ENSMUST00000194076 746 ntBASIC26.25■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 7.8 ms