Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 FEM1AP1-201ENST00000431297 1995 ntBASIC19.72■□□□□ 0.75
VPS4AQ9UN37 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 AL050303.2-201ENST00000619798 666 ntBASIC19.72■□□□□ 0.75
VPS4AQ9UN37 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 AC133041.1-202ENST00000642053 222 ntBASIC19.72■□□□□ 0.75
VPS4AQ9UN37 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS4AQ9UN37 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 LINC01006-201ENST00000333319 2292 ntBASIC19.71■□□□□ 0.75
VPS4AQ9UN37 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 SLC7A5P2-201ENST00000553010 536 ntBASIC19.71■□□□□ 0.75
VPS4AQ9UN37 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 AL138781.1-201ENST00000566567 1274 ntBASIC19.71■□□□□ 0.75
VPS4AQ9UN37 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS4AQ9UN37 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 PLK5-205ENST00000642079 1969 ntBASIC19.7■□□□□ 0.74
VPS4AQ9UN37 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 AC121338.2-201ENST00000622535 1744 ntBASIC19.7■□□□□ 0.74
VPS4AQ9UN37 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
VPS4AQ9UN37 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 AC069152.1-201ENST00000438030 544 ntBASIC19.69■□□□□ 0.74
VPS4AQ9UN37 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.69■□□□□ 0.74
VPS4AQ9UN37 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms