Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 BX276092.2-201ENST00000417668 665 ntBASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
HCN3Q9P1Z3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 AC121338.2-201ENST00000622535 1744 ntBASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 AC011484.1-201ENST00000377652 1995 ntBASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 MIPEPP3-201ENST00000412105 444 ntBASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HCN3Q9P1Z3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 AC098934.4-201ENST00000564127 592 ntBASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HCN3Q9P1Z3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 AL137060.1-201ENST00000618151 2648 ntBASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 CYP21A1P-202ENST00000354927 1481 ntBASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.41■□□□□ 0.7
HCN3Q9P1Z3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 MCRIP2P1-201ENST00000394346 511 ntBASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HCN3Q9P1Z3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
HCN3Q9P1Z3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.39■□□□□ 0.7
HCN3Q9P1Z3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HCN3Q9P1Z3 AL121603.2-201ENST00000557373 2117 ntBASIC19.39■□□□□ 0.69
HCN3Q9P1Z3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HCN3Q9P1Z3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HCN3Q9P1Z3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms