Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SCN3AQ9NY46 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.41■□□□□ 0.7
SCN3AQ9NY46 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 TSPY6P-201ENST00000448518 926 ntBASIC19.4■□□□□ 0.7
SCN3AQ9NY46 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SCN3AQ9NY46 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.39■□□□□ 0.7
SCN3AQ9NY46 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 AC083880.1-201ENST00000608266 535 ntBASIC19.39■□□□□ 0.69
SCN3AQ9NY46 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 AC100791.3-201ENST00000617619 330 ntBASIC19.39■□□□□ 0.69
SCN3AQ9NY46 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SCN3AQ9NY46 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SCN3AQ9NY46 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms