Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 KRASP1-201ENST00000407852 552 ntBASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 AC087499.1-201ENST00000418141 1075 ntBASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 KRT18P21-201ENST00000515767 1272 ntBASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC25.08■■□□□ 1.61
RTFDC1Q9BY42 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
RTFDC1Q9BY42 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 PGM5P4-201ENST00000421970 445 ntBASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 MOK-233ENST00000524214 1539 ntTSL 2 BASIC25.07■■□□□ 1.6
RTFDC1Q9BY42 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 AC233723.2-201ENST00000623798 2106 ntBASIC25.06■■□□□ 1.6
RTFDC1Q9BY42 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 MAX-217ENST00000557277 728 ntTSL 3 BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RTFDC1Q9BY42 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 AC133561.5-201ENST00000635547 218 ntBASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RTFDC1Q9BY42 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 RER1-204ENST00000378518 522 ntTSL 3 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 PRKY-204ENST00000533551 1019 ntBASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 AL355075.4-201ENST00000554988 638 ntBASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 AL356652.1-201ENST00000615962 565 ntBASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.03■■□□□ 1.6
RTFDC1Q9BY42 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC25.02■■□□□ 1.6
RTFDC1Q9BY42 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms