Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
ABCA3Q99758 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC27.61■■■□□ 2.01
ABCA3Q99758 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
ABCA3Q99758 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC27.61■■■□□ 2.01
ABCA3Q99758 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
ABCA3Q99758 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC27.6■■■□□ 2.01
ABCA3Q99758 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC27.6■■■□□ 2.01
ABCA3Q99758 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC27.6■■■□□ 2.01
ABCA3Q99758 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC27.6■■■□□ 2.01
ABCA3Q99758 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
ABCA3Q99758 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC27.6■■■□□ 2.01
ABCA3Q99758 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC27.6■■■□□ 2.01
ABCA3Q99758 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC27.6■■■□□ 2.01
ABCA3Q99758 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC27.6■■■□□ 2.01
ABCA3Q99758 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
ABCA3Q99758 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
ABCA3Q99758 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
ABCA3Q99758 AC080038.3-201ENST00000623346 1952 ntBASIC27.59■■■□□ 2.01
ABCA3Q99758 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC27.59■■■□□ 2.01
ABCA3Q99758 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC27.59■■■□□ 2.01
ABCA3Q99758 TREX2-204ENST00000370212 861 ntTSL 5 BASIC27.59■■■□□ 2.01
ABCA3Q99758 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC27.59■■■□□ 2.01
ABCA3Q99758 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC27.59■■■□□ 2.01
ABCA3Q99758 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC27.59■■■□□ 2.01
ABCA3Q99758 AP000525.1-201ENST00000608286 694 ntBASIC27.59■■■□□ 2.01
ABCA3Q99758 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC27.59■■■□□ 2.01
ABCA3Q99758 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
ABCA3Q99758 FAM197Y1-201ENST00000421178 764 ntBASIC27.58■■■□□ 2.01
ABCA3Q99758 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC27.58■■■□□ 2.01
ABCA3Q99758 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
ABCA3Q99758 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
ABCA3Q99758 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC27.58■■■□□ 2.01
ABCA3Q99758 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
ABCA3Q99758 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC27.58■■■□□ 2.01
ABCA3Q99758 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC27.58■■■□□ 2.01
ABCA3Q99758 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC27.58■■■□□ 2.01
ABCA3Q99758 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC27.58■■■□□ 2.01
ABCA3Q99758 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC27.58■■■□□ 2.01
ABCA3Q99758 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
ABCA3Q99758 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC27.58■■■□□ 2.01
ABCA3Q99758 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC27.58■■■□□ 2.01
ABCA3Q99758 FDX2-207ENST00000494368 584 ntTSL 4 BASIC27.58■■■□□ 2.01
ABCA3Q99758 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC27.58■■■□□ 2.01
ABCA3Q99758 AL031963.3-201ENST00000606441 850 ntBASIC27.58■■■□□ 2.01
ABCA3Q99758 AL121829.2-201ENST00000620908 328 ntBASIC27.58■■■□□ 2.01
ABCA3Q99758 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC27.58■■■□□ 2
ABCA3Q99758 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC27.58■■■□□ 2
ABCA3Q99758 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC27.57■■■□□ 2
ABCA3Q99758 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC27.57■■■□□ 2
ABCA3Q99758 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
ABCA3Q99758 BRWD1-AS2-201ENST00000603064 1028 ntBASIC27.57■■■□□ 2
ABCA3Q99758 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC27.57■■■□□ 2
ABCA3Q99758 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC27.56■■■□□ 2
ABCA3Q99758 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
ABCA3Q99758 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
ABCA3Q99758 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
ABCA3Q99758 AL390719.1-204ENST00000412397 1219 ntBASIC27.56■■■□□ 2
ABCA3Q99758 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC27.56■■■□□ 2
ABCA3Q99758 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC27.56■■■□□ 2
ABCA3Q99758 HTR7P1-201ENST00000538670 1336 ntBASIC27.56■■■□□ 2
ABCA3Q99758 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC27.56■■■□□ 2
ABCA3Q99758 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC27.55■■■□□ 2
ABCA3Q99758 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC27.55■■■□□ 2
ABCA3Q99758 AL121906.2-201ENST00000621597 723 ntBASIC27.55■■■□□ 2
ABCA3Q99758 AC124283.5-201ENST00000624661 1809 ntBASIC27.55■■■□□ 2
ABCA3Q99758 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
ABCA3Q99758 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC27.55■■■□□ 2
ABCA3Q99758 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
ABCA3Q99758 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
ABCA3Q99758 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC27.55■■■□□ 2
ABCA3Q99758 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC27.55■■■□□ 2
ABCA3Q99758 SLC25A3P1-201ENST00000443844 931 ntBASIC27.55■■■□□ 2
ABCA3Q99758 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC27.55■■■□□ 2
ABCA3Q99758 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC27.55■■■□□ 2
ABCA3Q99758 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC27.55■■■□□ 2
ABCA3Q99758 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC27.54■■■□□ 2
ABCA3Q99758 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
ABCA3Q99758 AL355355.2-201ENST00000442321 338 ntBASIC27.54■■■□□ 2
ABCA3Q99758 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC27.54■■■□□ 2
ABCA3Q99758 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC27.54■■■□□ 2
ABCA3Q99758 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
ABCA3Q99758 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC27.53■■■□□ 2
ABCA3Q99758 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC27.53■■■□□ 2
ABCA3Q99758 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
ABCA3Q99758 UNC93B2-201ENST00000285383 730 ntBASIC27.53■■■□□ 2
ABCA3Q99758 CRAT-202ENST00000393384 973 ntTSL 2 BASIC27.53■■■□□ 2
ABCA3Q99758 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC27.53■■■□□ 2
ABCA3Q99758 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC27.53■■■□□ 2
ABCA3Q99758 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC27.53■■■□□ 2
ABCA3Q99758 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC27.53■■■□□ 2
ABCA3Q99758 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
ABCA3Q99758 GLDC-219ENST00000640208 420 ntTSL 2 BASIC27.53■■■□□ 2
ABCA3Q99758 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
ABCA3Q99758 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
ABCA3Q99758 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC27.52■■■□□ 2
ABCA3Q99758 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC27.52■■■□□ 2
ABCA3Q99758 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
ABCA3Q99758 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
ABCA3Q99758 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
ABCA3Q99758 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms