Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SKA1Q96BD8 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.94■□□□□ 0.94
SKA1Q96BD8 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
SKA1Q96BD8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SKA1Q96BD8 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SKA1Q96BD8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
SKA1Q96BD8 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SKA1Q96BD8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 MIPEPP3-201ENST00000412105 444 ntBASIC20.92■□□□□ 0.94
SKA1Q96BD8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SKA1Q96BD8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
SKA1Q96BD8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA1Q96BD8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA1Q96BD8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA1Q96BD8 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA1Q96BD8 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 KRT16P2-201ENST00000414673 1423 ntBASIC20.91■□□□□ 0.94
SKA1Q96BD8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA1Q96BD8 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
SKA1Q96BD8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SKA1Q96BD8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA1Q96BD8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA1Q96BD8 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA1Q96BD8 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA1Q96BD8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA1Q96BD8 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.9■□□□□ 0.94
SKA1Q96BD8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SKA1Q96BD8 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SKA1Q96BD8 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms