Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTL3Q8N8U3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RTL3Q8N8U3 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
RTL3Q8N8U3 PGM5P4-201ENST00000421970 445 ntBASIC21■□□□□ 0.95
RTL3Q8N8U3 GUSBP6-202ENST00000438529 1198 ntBASIC21■□□□□ 0.95
RTL3Q8N8U3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21■□□□□ 0.95
RTL3Q8N8U3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21■□□□□ 0.95
RTL3Q8N8U3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTL3Q8N8U3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 AL355472.2-201ENST00000422958 438 ntBASIC20.99■□□□□ 0.95
RTL3Q8N8U3 TSPY6P-201ENST00000448518 926 ntBASIC20.99■□□□□ 0.95
RTL3Q8N8U3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.99■□□□□ 0.95
RTL3Q8N8U3 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 AL121603.2-201ENST00000557373 2117 ntBASIC20.98■□□□□ 0.95
RTL3Q8N8U3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 KRT18P68-201ENST00000392293 1000 ntBASIC20.98■□□□□ 0.95
RTL3Q8N8U3 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 AL356652.1-201ENST00000615962 565 ntBASIC20.98■□□□□ 0.95
RTL3Q8N8U3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.98■□□□□ 0.95
RTL3Q8N8U3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 KRT8P36-201ENST00000489121 1440 ntBASIC20.97■□□□□ 0.95
RTL3Q8N8U3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.97■□□□□ 0.95
RTL3Q8N8U3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RTL3Q8N8U3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms