Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AC087289.5-201ENST00000586076 3175 ntBASIC20.29■□□□□ 0.84
NUDCD3Q8IVD9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
NUDCD3Q8IVD9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
NUDCD3Q8IVD9 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NUDCD3Q8IVD9 AC061975.6-201ENST00000579045 1553 ntBASIC20.29■□□□□ 0.84
NUDCD3Q8IVD9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NUDCD3Q8IVD9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.28■□□□□ 0.84
NUDCD3Q8IVD9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 AC053503.5-201ENST00000601508 636 ntBASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NUDCD3Q8IVD9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NUDCD3Q8IVD9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NUDCD3Q8IVD9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NUDCD3Q8IVD9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
NUDCD3Q8IVD9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 UNC93B3-201ENST00000308076 687 ntBASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 EEF1DP3-203ENST00000566025 782 ntBASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 SMG8-203ENST00000578922 2178 ntBASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NUDCD3Q8IVD9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NUDCD3Q8IVD9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NUDCD3Q8IVD9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms