Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 YML108WYML108W 318 nt2.8□□□□□ -1.96
RPN11P43588 SEN15YMR059W 387 nt2.8□□□□□ -1.96
RPN11P43588 IGO1YNL157W 507 nt2.8□□□□□ -1.96
RPN11P43588 PEP12YOR036W 867 nt2.8□□□□□ -1.96
RPN11P43588 KRE33YNL132W 3171 nt2.8□□□□□ -1.96
RPN11P43588 SPO23YBR250W 1572 nt2.79□□□□□ -1.96
RPN11P43588 VHR2YER064C 1518 nt2.79□□□□□ -1.96
RPN11P43588 TOM1YDR457W 9807 nt2.79□□□□□ -1.96
RPN11P43588 YDR157WYDR157W 402 nt2.79□□□□□ -1.96
RPN11P43588 SMB1YER029C 591 nt2.79□□□□□ -1.96
RPN11P43588 YLR154W-FYLR154W-F 141 nt2.79□□□□□ -1.96
RPN11P43588 NPR3YHL023C 3441 nt2.79□□□□□ -1.96
RPN11P43588 PSK1YAL017W 4071 nt2.79□□□□□ -1.96
RPN11P43588 MED1YPR070W 1701 nt2.79□□□□□ -1.96
RPN11P43588 SPE1YKL184W 1401 nt2.78□□□□□ -1.96
RPN11P43588 SIP3YNL257C 3690 nt2.78□□□□□ -1.96
RPN11P43588 RTT10YPL183C 3042 nt2.78□□□□□ -1.96
RPN11P43588 YCR081C-AYCR081C-A 237 nt2.78□□□□□ -1.96
RPN11P43588 AGA2YGL032C 264 nt2.78□□□□□ -1.96
RPN11P43588 PNC1YGL037C 651 nt2.78□□□□□ -1.96
RPN11P43588 YPS5YGL259W 498 nt2.78□□□□□ -1.96
RPN11P43588 ERV1YGR029W 570 nt2.78□□□□□ -1.96
RPN11P43588 BIG1YHR101C 1008 nt2.78□□□□□ -1.96
RPN11P43588 SPC1YJR010C-A 285 nt2.78□□□□□ -1.96
RPN11P43588 RMP1YLR145W 606 nt2.78□□□□□ -1.96
RPN11P43588 MSS18YPR134W 807 nt2.78□□□□□ -1.96
RPN11P43588 ARR2YPR200C 393 nt2.78□□□□□ -1.96
RPN11P43588 TAO3YIL129C 7131 nt2.78□□□□□ -1.96
RPN11P43588 ARP7YPR034W 1434 nt2.77□□□□□ -1.97
RPN11P43588 UTP13YLR222C 2454 nt2.77□□□□□ -1.97
RPN11P43588 NPR1YNL183C 2373 nt2.77□□□□□ -1.97
RPN11P43588 YDR118W-AYDR118W-A 117 nt2.77□□□□□ -1.97
RPN11P43588 YER107W-AYER107W-A 321 nt2.77□□□□□ -1.97
RPN11P43588 RTS3YGR161C 792 nt2.77□□□□□ -1.97
RPN11P43588 tR(ACG)Q2tR(ACG)Q2 74 nt2.77□□□□□ -1.97
RPN11P43588 YLR334CYLR334C 381 nt2.77□□□□□ -1.97
RPN11P43588 CDC33YOL139C 642 nt2.77□□□□□ -1.97
RPN11P43588 HSP10YOR020C 321 nt2.77□□□□□ -1.97
RPN11P43588 BUD21YOR078W 645 nt2.77□□□□□ -1.97
RPN11P43588 CDC55YGL190C 1581 nt2.77□□□□□ -1.97
RPN11P43588 DOA4YDR069C 2781 nt2.76□□□□□ -1.97
RPN11P43588 SOK1YDR006C 2706 nt2.76□□□□□ -1.97
RPN11P43588 YLR101CYLR101C 396 nt2.76□□□□□ -1.97
RPN11P43588 YLR406C-AYLR406C-A 150 nt2.76□□□□□ -1.97
RPN11P43588 HSC82YMR186W 2118 nt2.76□□□□□ -1.97
RPN11P43588 CMC2YBL059C-A 330 nt2.76□□□□□ -1.97
RPN11P43588 LEE1YPL054W 906 nt2.76□□□□□ -1.97
RPN11P43588 YPL261CYPL261C 309 nt2.76□□□□□ -1.97
RPN11P43588 PPN1YDR452W 2025 nt2.76□□□□□ -1.97
RPN11P43588 DNF1YER166W 4716 nt2.76□□□□□ -1.97
RPN11P43588 ALK2YBL009W 2031 nt2.76□□□□□ -1.97
RPN11P43588 MIX14YDR031W 366 nt2.75□□□□□ -1.97
RPN11P43588 ESF2YNR054C 951 nt2.75□□□□□ -1.97
RPN11P43588 YPR170W-AYPR170W-A 186 nt2.75□□□□□ -1.97
RPN11P43588 CWC22YGR278W 1734 nt2.75□□□□□ -1.97
RPN11P43588 UTP22YGR090W 3714 nt2.75□□□□□ -1.97
RPN11P43588 PDC2YDR081C 2778 nt2.74□□□□□ -1.97
RPN11P43588 CLN3YAL040C 1743 nt2.74□□□□□ -1.97
RPN11P43588 GYP5YPL249C 2685 nt2.74□□□□□ -1.97
RPN11P43588 MRD1YPR112C 2664 nt2.74□□□□□ -1.97
RPN11P43588 TIM11YDR322C-A 291 nt2.74□□□□□ -1.97
RPN11P43588 RPL29YFR032C-A 180 nt2.74□□□□□ -1.97
RPN11P43588 YNL046WYNL046W 519 nt2.74□□□□□ -1.97
RPN11P43588 snR54snR54 86 nt2.74□□□□□ -1.97
RPN11P43588 ESL1YIL151C 3357 nt2.74□□□□□ -1.97
RPN11P43588 IRC4YDR540C 540 nt2.73□□□□□ -1.97
RPN11P43588 GIM4YEL003W 336 nt2.73□□□□□ -1.97
RPN11P43588 YHR125WYHR125W 306 nt2.73□□□□□ -1.97
RPN11P43588 CRG1YHR209W 876 nt2.73□□□□□ -1.97
RPN11P43588 YJR023CYJR023C 402 nt2.73□□□□□ -1.97
RPN11P43588 UNG1YML021C 1080 nt2.73□□□□□ -1.97
RPN11P43588 YBL065WYBL065W 345 nt2.73□□□□□ -1.97
RPN11P43588 FUS1YCL027W 1539 nt2.73□□□□□ -1.97
RPN11P43588 YNL034WYNL034W 1839 nt2.72□□□□□ -1.97
RPN11P43588 PUF6YDR496C 1971 nt2.72□□□□□ -1.97
RPN11P43588 YER006C-AYER006C-A 318 nt2.72□□□□□ -1.97
RPN11P43588 FYV4YHR059W 393 nt2.72□□□□□ -1.97
RPN11P43588 YHR139C-AYHR139C-A 312 nt2.72□□□□□ -1.97
RPN11P43588 YJR079WYJR079W 330 nt2.72□□□□□ -1.97
RPN11P43588 YPL080CYPL080C 327 nt2.72□□□□□ -1.97
RPN11P43588 NSL1YPL233W 651 nt2.72□□□□□ -1.97
RPN11P43588 YBR209WYBR209W 318 nt2.72□□□□□ -1.97
RPN11P43588 RCY1YJL204C 2523 nt2.72□□□□□ -1.97
RPN11P43588 HRD3YLR207W 2502 nt2.72□□□□□ -1.97
RPN11P43588 MOT1YPL082C 5604 nt2.71□□□□□ -1.98
RPN11P43588 YHR214C-CYHR214C-C 1437 nt2.71□□□□□ -1.98
RPN11P43588 YKL063CYKL063C 504 nt2.71□□□□□ -1.98
RPN11P43588 YOR293C-AYOR293C-A 150 nt2.71□□□□□ -1.98
RPN11P43588 YPL197CYPL197C 414 nt2.71□□□□□ -1.98
RPN11P43588 YBR085C-AYBR085C-A 258 nt2.71□□□□□ -1.98
RPN11P43588 KAP104YBR017C 2757 nt2.71□□□□□ -1.98
RPN11P43588 YBR012W-AYBR012W-A 1323 nt2.7□□□□□ -1.98
RPN11P43588 YOR142W-AYOR142W-A 1323 nt2.7□□□□□ -1.98
RPN11P43588 YPR158W-AYPR158W-A 1323 nt2.7□□□□□ -1.98
RPN11P43588 GIP3YPL137C 3831 nt2.7□□□□□ -1.98
RPN11P43588 DPB11YJL090C 2295 nt2.7□□□□□ -1.98
RPN11P43588 YER135CYER135C 393 nt2.7□□□□□ -1.98
RPN11P43588 NBL1YHR199C-A 222 nt2.7□□□□□ -1.98
RPN11P43588 YBR076C-AYBR076C-A 267 nt2.7□□□□□ -1.98
RPN11P43588 ESL2YKR096W 3588 nt2.7□□□□□ -1.98
Retrieved 100 of 7,029 protein–RNA pairs in 65.4 ms