Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
PTPN9P43378 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.31■■□□□ 1
PTPN9P43378 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 AC008694.1-202ENST00000636953 945 ntBASIC21.31■■□□□ 1
PTPN9P43378 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.31■■□□□ 1
PTPN9P43378 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.31■■□□□ 1
PTPN9P43378 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PTPN9P43378 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.3■■□□□ 1
PTPN9P43378 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.3■■□□□ 1
PTPN9P43378 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
PTPN9P43378 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 MCRIP2P1-201ENST00000394346 511 ntBASIC21.3■■□□□ 1
PTPN9P43378 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.3■■□□□ 1
PTPN9P43378 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PTPN9P43378 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.3■■□□□ 1
PTPN9P43378 AL157384.1-201ENST00000445995 2473 ntBASIC21.3■■□□□ 1
PTPN9P43378 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.3■■□□□ 1
PTPN9P43378 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.29■■□□□ 1
PTPN9P43378 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.29■■□□□ 1
PTPN9P43378 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.29■■□□□ 1
PTPN9P43378 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.29■■□□□ 1
PTPN9P43378 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.29■■□□□ 1
PTPN9P43378 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
PTPN9P43378 AC133552.2-202ENST00000575694 574 ntBASIC21.29■■□□□ 1
PTPN9P43378 AC092666.2-201ENST00000613287 246 ntBASIC21.29■■□□□ 1
PTPN9P43378 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.29■■□□□ 1
PTPN9P43378 AC020907.5-201ENST00000624372 1936 ntBASIC21.29■■□□□ 1
PTPN9P43378 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
PTPN9P43378 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.28■■□□□ 1
PTPN9P43378 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.28■■□□□ 1
PTPN9P43378 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.28■■□□□ 1
PTPN9P43378 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.28■■□□□ 1
PTPN9P43378 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.28■■□□□ 1
PTPN9P43378 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 AL512625.2-201ENST00000417533 625 ntBASIC21.28■■□□□ 1
PTPN9P43378 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.28■■□□□ 1
PTPN9P43378 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
PTPN9P43378 AL356652.1-201ENST00000615962 565 ntBASIC21.28■■□□□ 1
PTPN9P43378 AL050303.2-201ENST00000619798 666 ntBASIC21.28■■□□□ 1
PTPN9P43378 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.28■■□□□ 1
PTPN9P43378 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.28■■□□□ 1
PTPN9P43378 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
PTPN9P43378 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PTPN9P43378 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PTPN9P43378 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTPN9P43378 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
PTPN9P43378 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.27■■□□□ 1
PTPN9P43378 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PTPN9P43378 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.27■■□□□ 1
PTPN9P43378 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.27■■□□□ 1
PTPN9P43378 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
PTPN9P43378 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.27■■□□□ 1
PTPN9P43378 CROCCP5-201ENST00000436658 830 ntBASIC21.27■■□□□ 1
PTPN9P43378 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.27■■□□□ 1
PTPN9P43378 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.27■■□□□ 1
PTPN9P43378 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.27■■□□□ 1
PTPN9P43378 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.27■■□□□ 1
PTPN9P43378 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
PTPN9P43378 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.27■■□□□ 1
PTPN9P43378 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PTPN9P43378 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms