Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC25.26■■□□□ 1.63
COL4A1P02462 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
COL4A1P02462 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
COL4A1P02462 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC25.26■■□□□ 1.63
COL4A1P02462 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC25.26■■□□□ 1.63
COL4A1P02462 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC25.26■■□□□ 1.63
COL4A1P02462 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
COL4A1P02462 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
COL4A1P02462 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
COL4A1P02462 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC25.26■■□□□ 1.63
COL4A1P02462 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC25.26■■□□□ 1.63
COL4A1P02462 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC25.26■■□□□ 1.63
COL4A1P02462 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
COL4A1P02462 AC006557.6-201ENST00000623071 864 ntBASIC25.26■■□□□ 1.63
COL4A1P02462 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
COL4A1P02462 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
COL4A1P02462 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
COL4A1P02462 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
COL4A1P02462 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
COL4A1P02462 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC25.25■■□□□ 1.63
COL4A1P02462 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC25.25■■□□□ 1.63
COL4A1P02462 AC005829.2-201ENST00000571422 1056 ntBASIC25.25■■□□□ 1.63
COL4A1P02462 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
COL4A1P02462 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
COL4A1P02462 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
COL4A1P02462 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
COL4A1P02462 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.24■■□□□ 1.63
COL4A1P02462 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
COL4A1P02462 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC25.24■■□□□ 1.63
COL4A1P02462 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC25.24■■□□□ 1.63
COL4A1P02462 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC25.24■■□□□ 1.63
COL4A1P02462 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
COL4A1P02462 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.24■■□□□ 1.63
COL4A1P02462 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC25.24■■□□□ 1.63
COL4A1P02462 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
COL4A1P02462 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
COL4A1P02462 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
COL4A1P02462 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 HES2-206ENST00000489730 730 ntTSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
COL4A1P02462 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC25.23■■□□□ 1.63
COL4A1P02462 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
COL4A1P02462 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
COL4A1P02462 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 AC012618.2-201ENST00000428058 849 ntBASIC25.23■■□□□ 1.63
COL4A1P02462 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC25.23■■□□□ 1.63
COL4A1P02462 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.23■■□□□ 1.63
COL4A1P02462 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC25.23■■□□□ 1.63
COL4A1P02462 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC25.23■■□□□ 1.63
COL4A1P02462 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
COL4A1P02462 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
COL4A1P02462 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
COL4A1P02462 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC25.22■■□□□ 1.63
COL4A1P02462 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
COL4A1P02462 TSPY7P-201ENST00000431358 1114 ntBASIC25.22■■□□□ 1.63
COL4A1P02462 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
COL4A1P02462 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.22■■□□□ 1.63
COL4A1P02462 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.22■■□□□ 1.63
COL4A1P02462 AL023875.1-201ENST00000640777 796 ntBASIC25.22■■□□□ 1.63
COL4A1P02462 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
COL4A1P02462 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL4A1P02462 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL4A1P02462 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC25.21■■□□□ 1.63
COL4A1P02462 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
COL4A1P02462 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC25.21■■□□□ 1.63
COL4A1P02462 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC25.21■■□□□ 1.63
COL4A1P02462 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC25.21■■□□□ 1.63
COL4A1P02462 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC25.21■■□□□ 1.63
COL4A1P02462 TUB-203ENST00000534099 1759 ntTSL 2 BASIC25.21■■□□□ 1.63
COL4A1P02462 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
COL4A1P02462 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
COL4A1P02462 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.21■■□□□ 1.63
COL4A1P02462 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.63
COL4A1P02462 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.63
COL4A1P02462 AC133681.1-201ENST00000465482 601 ntBASIC25.2■■□□□ 1.63
COL4A1P02462 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.2■■□□□ 1.63
COL4A1P02462 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC25.2■■□□□ 1.63
COL4A1P02462 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
COL4A1P02462 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.63
COL4A1P02462 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.2■■□□□ 1.62
COL4A1P02462 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC25.2■■□□□ 1.62
COL4A1P02462 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC25.2■■□□□ 1.62
COL4A1P02462 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
COL4A1P02462 AC124283.5-201ENST00000624661 1809 ntBASIC25.2■■□□□ 1.62
COL4A1P02462 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms