Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RAPGEF3O95398 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC31.07■■■□□ 2.56
RAPGEF3O95398 AL353807.1-201ENST00000427475 662 ntBASIC31.07■■■□□ 2.56
RAPGEF3O95398 AC073195.1-201ENST00000607241 877 ntBASIC31.07■■■□□ 2.56
RAPGEF3O95398 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
RAPGEF3O95398 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC31.07■■■□□ 2.56
RAPGEF3O95398 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 SLC25A3P1-201ENST00000443844 931 ntBASIC31.06■■■□□ 2.56
RAPGEF3O95398 HES2-206ENST00000489730 730 ntTSL 2 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
RAPGEF3O95398 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC31.06■■■□□ 2.56
RAPGEF3O95398 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
RAPGEF3O95398 STX5-203ENST00000394690 1568 ntTSL 5 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
RAPGEF3O95398 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 AL121894.2-201ENST00000602977 491 ntBASIC31.05■■■□□ 2.56
RAPGEF3O95398 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC31.05■■■□□ 2.56
RAPGEF3O95398 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC31.05■■■□□ 2.56
RAPGEF3O95398 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RAPGEF3O95398 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC31.04■■■□□ 2.56
RAPGEF3O95398 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
RAPGEF3O95398 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 KRT18P22-201ENST00000402024 1347 ntBASIC31.03■■■□□ 2.56
RAPGEF3O95398 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 NAPSB-206ENST00000562112 1266 ntBASIC31.03■■■□□ 2.56
RAPGEF3O95398 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
RAPGEF3O95398 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
RAPGEF3O95398 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC31.02■■■□□ 2.56
RAPGEF3O95398 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RAPGEF3O95398 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RAPGEF3O95398 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
RAPGEF3O95398 F2R-202ENST00000505600 442 ntTSL 2 BASIC31.02■■■□□ 2.56
RAPGEF3O95398 TMA16-209ENST00000513272 803 ntTSL 2 BASIC31.02■■■□□ 2.56
RAPGEF3O95398 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
RAPGEF3O95398 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
RAPGEF3O95398 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
RAPGEF3O95398 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC31.01■■■□□ 2.56
RAPGEF3O95398 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
RAPGEF3O95398 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
RAPGEF3O95398 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC31.01■■■□□ 2.55
RAPGEF3O95398 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
RAPGEF3O95398 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC31.01■■■□□ 2.55
RAPGEF3O95398 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
RAPGEF3O95398 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
RAPGEF3O95398 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC31■■■□□ 2.55
RAPGEF3O95398 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
RAPGEF3O95398 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC31■■■□□ 2.55
RAPGEF3O95398 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
RAPGEF3O95398 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC31■■■□□ 2.55
RAPGEF3O95398 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC31■■■□□ 2.55
RAPGEF3O95398 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC31■■■□□ 2.55
RAPGEF3O95398 AL121829.2-201ENST00000620908 328 ntBASIC31■■■□□ 2.55
RAPGEF3O95398 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC31■■■□□ 2.55
RAPGEF3O95398 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
RAPGEF3O95398 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC30.99■■■□□ 2.55
RAPGEF3O95398 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC30.99■■■□□ 2.55
RAPGEF3O95398 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC30.99■■■□□ 2.55
RAPGEF3O95398 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
RAPGEF3O95398 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC30.99■■■□□ 2.55
RAPGEF3O95398 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC30.99■■■□□ 2.55
RAPGEF3O95398 AC010203.1-204ENST00000548782 407 ntBASIC30.99■■■□□ 2.55
RAPGEF3O95398 FITM1-202ENST00000559294 800 ntBASIC30.99■■■□□ 2.55
RAPGEF3O95398 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms