Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM49D1C9J1S8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 TCF3P1-201ENST00000423021 1937 ntBASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 MIR939-201ENST00000401314 82 ntBASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 POU5F1P4-201ENST00000413175 1085 ntBASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM49D1C9J1S8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 AL355001.2-201ENST00000620617 1191 ntBASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 RARRES2P11-201ENST00000635158 484 ntBASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM49D1C9J1S8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM49D1C9J1S8 AC008406.3-201ENST00000620001 1374 ntBASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 AC091305.1-201ENST00000479476 895 ntBASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM49D1C9J1S8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
TRIM49D1C9J1S8 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
TRIM49D1C9J1S8 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM49D1C9J1S8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 AL136967.2-201ENST00000623968 743 ntBASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
TRIM49D1C9J1S8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms