Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 AC133561.5-201ENST00000635547 218 ntBASIC18.63■□□□□ 0.57
SHANK1Q9Y566 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SHANK1Q9Y566 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 AC097493.4-201ENST00000641197 219 ntBASIC18.62■□□□□ 0.57
SHANK1Q9Y566 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SHANK1Q9Y566 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.61■□□□□ 0.57
SHANK1Q9Y566 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 KRT17P2-201ENST00000300992 1314 ntBASIC18.6■□□□□ 0.57
SHANK1Q9Y566 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SHANK1Q9Y566 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 TSPY15P-201ENST00000457163 923 ntBASIC18.59■□□□□ 0.57
SHANK1Q9Y566 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 AC239809.2-201ENST00000415381 517 ntBASIC18.59■□□□□ 0.57
SHANK1Q9Y566 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 MIR4785-201ENST00000585005 73 ntBASIC18.59■□□□□ 0.57
SHANK1Q9Y566 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.59■□□□□ 0.57
SHANK1Q9Y566 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.58■□□□□ 0.57
SHANK1Q9Y566 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms