Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC005224.4-201ENST00000583262 1652 ntBASIC19.78■□□□□ 0.76
VPS4AQ9UN37 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4AQ9UN37 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS4AQ9UN37 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 AC007322.1-201ENST00000426983 750 ntBASIC19.76■□□□□ 0.75
VPS4AQ9UN37 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS4AQ9UN37 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 AC006128.1-201ENST00000624704 1661 ntBASIC19.75■□□□□ 0.75
VPS4AQ9UN37 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS4AQ9UN37 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 MFSD11-216ENST00000590393 1141 ntBASIC19.74■□□□□ 0.75
VPS4AQ9UN37 AC005181.1-201ENST00000604782 1256 ntBASIC19.74■□□□□ 0.75
VPS4AQ9UN37 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS4AQ9UN37 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.73■□□□□ 0.75
VPS4AQ9UN37 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 MIR4651-201ENST00000582622 73 ntBASIC19.73■□□□□ 0.75
VPS4AQ9UN37 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
VPS4AQ9UN37 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms