Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
DDX41Q9UJV9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
DDX41Q9UJV9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 AC245052.3-201ENST00000450182 901 ntBASIC23.53■■□□□ 1.36
DDX41Q9UJV9 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 AC083880.1-201ENST00000608266 535 ntBASIC23.53■■□□□ 1.36
DDX41Q9UJV9 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC23.53■■□□□ 1.36
DDX41Q9UJV9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 AC091874.3-201ENST00000512672 1195 ntBASIC23.52■■□□□ 1.36
DDX41Q9UJV9 RNA5SP413-201ENST00000516373 109 ntBASIC23.52■■□□□ 1.36
DDX41Q9UJV9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.52■■□□□ 1.36
DDX41Q9UJV9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 FAM201B-201ENST00000458407 597 ntBASIC23.51■■□□□ 1.35
DDX41Q9UJV9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 AC097658.1-201ENST00000475555 843 ntBASIC23.51■■□□□ 1.35
DDX41Q9UJV9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 FAM21FP-204ENST00000608637 956 ntBASIC23.51■■□□□ 1.35
DDX41Q9UJV9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.51■■□□□ 1.35
DDX41Q9UJV9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.5■■□□□ 1.35
DDX41Q9UJV9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms