Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 AC243732.1-201ENST00000612648 864 ntBASIC18.29■□□□□ 0.52
VSX1Q9NZR4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
VSX1Q9NZR4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
VSX1Q9NZR4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 SLC25A24-204ENST00000569674 2357 ntBASIC18.27■□□□□ 0.52
VSX1Q9NZR4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.27■□□□□ 0.52
VSX1Q9NZR4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VSX1Q9NZR4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.27■□□□□ 0.51
VSX1Q9NZR4 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
VSX1Q9NZR4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.27■□□□□ 0.51
VSX1Q9NZR4 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 RBM17P2-201ENST00000616397 1405 ntBASIC18.26■□□□□ 0.51
VSX1Q9NZR4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 KRT19P1-201ENST00000405746 1186 ntBASIC18.26■□□□□ 0.51
VSX1Q9NZR4 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 AL121603.2-201ENST00000557373 2117 ntBASIC18.26■□□□□ 0.51
VSX1Q9NZR4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VSX1Q9NZR4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 AC019069.1-201ENST00000610008 1333 ntBASIC18.25■□□□□ 0.51
VSX1Q9NZR4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VSX1Q9NZR4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms