Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
DDX28Q9NUL7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 EDA-201ENST00000338901 1233 ntBASIC18.67■□□□□ 0.58
DDX28Q9NUL7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.67■□□□□ 0.58
DDX28Q9NUL7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 AC026471.1-201ENST00000564629 3026 ntBASIC18.66■□□□□ 0.58
DDX28Q9NUL7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
DDX28Q9NUL7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 AP006587.3-201ENST00000525742 1516 ntBASIC18.65■□□□□ 0.58
DDX28Q9NUL7 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 AC099791.1-201ENST00000416440 715 ntBASIC18.65■□□□□ 0.58
DDX28Q9NUL7 AP001330.3-201ENST00000520123 633 ntBASIC18.65■□□□□ 0.58
DDX28Q9NUL7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 AC008764.7-201ENST00000593779 1081 ntBASIC18.65■□□□□ 0.58
DDX28Q9NUL7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
DDX28Q9NUL7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
DDX28Q9NUL7 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
DDX28Q9NUL7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.64■□□□□ 0.58
DDX28Q9NUL7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 AC003102.1-202ENST00000563394 1796 ntBASIC18.64■□□□□ 0.57
DDX28Q9NUL7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.64■□□□□ 0.57
DDX28Q9NUL7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
DDX28Q9NUL7 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 FEM1AP4-201ENST00000443167 1987 ntBASIC18.63■□□□□ 0.57
DDX28Q9NUL7 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 ZNRF2P3-201ENST00000424200 374 ntBASIC18.63■□□□□ 0.57
DDX28Q9NUL7 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
DDX28Q9NUL7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms