Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 AC006970.2-201ENST00000450065 779 ntBASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 PPP1R14BP3-201ENST00000509033 445 ntBASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 AC090192.1-201ENST00000517740 490 ntBASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
ECHDC1Q9NTX5 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 AL512625.2-201ENST00000417533 625 ntBASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 AL121603.2-201ENST00000557373 2117 ntBASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
ECHDC1Q9NTX5 BID-203ENST00000399765 1879 ntTSL 2 BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
ECHDC1Q9NTX5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 AC010980.2-201ENST00000587099 1412 ntBASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
ECHDC1Q9NTX5 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 MCRIP2P1-201ENST00000394346 511 ntBASIC25■■□□□ 1.59
ECHDC1Q9NTX5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 AF201337.1-201ENST00000520239 748 ntBASIC25■■□□□ 1.59
ECHDC1Q9NTX5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 AC087633.2-202ENST00000565166 1439 ntBASIC25■■□□□ 1.59
ECHDC1Q9NTX5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC25■■□□□ 1.59
ECHDC1Q9NTX5 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 NCF1B-203ENST00000435988 1254 ntBASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 AC105036.2-201ENST00000569468 176 ntBASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
ECHDC1Q9NTX5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 AL121832.2-201ENST00000610979 668 ntBASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
ECHDC1Q9NTX5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms