Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 BID-203ENST00000399765 1879 ntTSL 2 BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 CDCA4P2-201ENST00000441182 718 ntBASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 AL162412.1-201ENST00000567129 965 ntBASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 FAM21FP-204ENST00000608637 956 ntBASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 MDK-213ENST00000617138 635 ntTSL 2 BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC4Q9NTJ3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 APTR-203ENST00000430801 583 ntTSL 5 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 CYP2T1P-201ENST00000432607 1285 ntBASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 AL121603.2-201ENST00000557373 2117 ntBASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMC4Q9NTJ3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC4Q9NTJ3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMC4Q9NTJ3 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 FEM1AP1-201ENST00000431297 1995 ntBASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 RAP2CP1-201ENST00000605103 478 ntBASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMC4Q9NTJ3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 AC005181.1-201ENST00000604782 1256 ntBASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMC4Q9NTJ3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms