Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.91■■□□□ 1.1
CISHQ9NSE2 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CISHQ9NSE2 FP700111.2-201ENST00000619190 1892 ntBASIC21.91■■□□□ 1.1
CISHQ9NSE2 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.91■■□□□ 1.1
CISHQ9NSE2 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CISHQ9NSE2 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CISHQ9NSE2 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 AC090192.1-201ENST00000517740 490 ntBASIC21.9■■□□□ 1.1
CISHQ9NSE2 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 AC133552.2-202ENST00000575694 574 ntBASIC21.9■■□□□ 1.1
CISHQ9NSE2 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.9■■□□□ 1.1
CISHQ9NSE2 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CISHQ9NSE2 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
CISHQ9NSE2 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CISHQ9NSE2 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.89■■□□□ 1.1
CISHQ9NSE2 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 AC006970.2-201ENST00000450065 779 ntBASIC21.89■■□□□ 1.09
CISHQ9NSE2 AC093787.1-201ENST00000450396 207 ntBASIC21.89■■□□□ 1.09
CISHQ9NSE2 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.89■■□□□ 1.09
CISHQ9NSE2 MIR2861-201ENST00000636310 90 ntBASIC21.89■■□□□ 1.09
CISHQ9NSE2 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.89■■□□□ 1.09
CISHQ9NSE2 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
CISHQ9NSE2 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 CYP21A1P-202ENST00000354927 1481 ntBASIC21.89■■□□□ 1.09
CISHQ9NSE2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
CISHQ9NSE2 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CISHQ9NSE2 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.88■■□□□ 1.09
CISHQ9NSE2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
CISHQ9NSE2 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CISHQ9NSE2 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CISHQ9NSE2 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.88■■□□□ 1.09
CISHQ9NSE2 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CISHQ9NSE2 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
CISHQ9NSE2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.88■■□□□ 1.09
CISHQ9NSE2 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CISHQ9NSE2 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CISHQ9NSE2 AL121603.2-201ENST00000557373 2117 ntBASIC21.88■■□□□ 1.09
CISHQ9NSE2 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CISHQ9NSE2 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.87■■□□□ 1.09
CISHQ9NSE2 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.87■■□□□ 1.09
CISHQ9NSE2 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.87■■□□□ 1.09
CISHQ9NSE2 AC100791.3-201ENST00000617619 330 ntBASIC21.87■■□□□ 1.09
CISHQ9NSE2 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.87■■□□□ 1.09
CISHQ9NSE2 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CISHQ9NSE2 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CISHQ9NSE2 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.87■■□□□ 1.09
CISHQ9NSE2 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CISHQ9NSE2 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 AL512625.2-201ENST00000417533 625 ntBASIC21.86■■□□□ 1.09
CISHQ9NSE2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.86■■□□□ 1.09
CISHQ9NSE2 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 AC010980.2-201ENST00000587099 1412 ntBASIC21.86■■□□□ 1.09
CISHQ9NSE2 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.86■■□□□ 1.09
CISHQ9NSE2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CISHQ9NSE2 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.85■■□□□ 1.09
CISHQ9NSE2 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.85■■□□□ 1.09
CISHQ9NSE2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CISHQ9NSE2 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CISHQ9NSE2 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.85■■□□□ 1.09
CISHQ9NSE2 MCRIP2P1-201ENST00000394346 511 ntBASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms