Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.33■□□□□ 0.85
TRIM39Q9HCM9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
TRIM39Q9HCM9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM39Q9HCM9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.33■□□□□ 0.84
TRIM39Q9HCM9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
TRIM39Q9HCM9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 MCRIP2P1-201ENST00000394346 511 ntBASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 MIPEPP3-201ENST00000412105 444 ntBASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 AC142086.2-201ENST00000569753 217 ntBASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 AC121338.2-201ENST00000622535 1744 ntBASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
TRIM39Q9HCM9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 AL355802.2-201ENST00000402069 882 ntBASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM39Q9HCM9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 BX276092.2-201ENST00000417668 665 ntBASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
TRIM39Q9HCM9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 AL138781.1-201ENST00000566567 1274 ntBASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 MIR4758-201ENST00000577688 71 ntBASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 CYP2T3P-201ENST00000601990 817 ntBASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 CYP21A1P-202ENST00000354927 1481 ntBASIC20.29■□□□□ 0.84
TRIM39Q9HCM9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 AL355472.2-201ENST00000422958 438 ntBASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
TRIM39Q9HCM9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms