Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 BX088651.1-201ENST00000540551 451 ntBASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 AL023875.1-201ENST00000640777 796 ntBASIC22.95■■□□□ 1.26
UPF3AQ9H1J1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 PGM5P4-201ENST00000421970 445 ntBASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 LINC01023-201ENST00000606054 436 ntBASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 AL049637.2-201ENST00000641778 930 ntBASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
UPF3AQ9H1J1 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 AC239809.2-201ENST00000415381 517 ntBASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 TSPY7P-201ENST00000431358 1114 ntBASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
UPF3AQ9H1J1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 KRT17P2-201ENST00000300992 1314 ntBASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 AC110285.5-201ENST00000611501 352 ntBASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC22.92■■□□□ 1.26
UPF3AQ9H1J1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 AC006557.6-201ENST00000623071 864 ntBASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
UPF3AQ9H1J1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 AP001412.1-201ENST00000608405 714 ntBASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 AL356652.1-201ENST00000615962 565 ntBASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 AL135905.2-201ENST00000584934 1404 ntBASIC22.9■■□□□ 1.26
UPF3AQ9H1J1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
UPF3AQ9H1J1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
UPF3AQ9H1J1 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.89■■□□□ 1.25
UPF3AQ9H1J1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms