Protein–RNA interactions for Protein: Q8WWI5

SLC44A1, Choline transporter-like protein 1, humanhuman

Predictions only

Length 657 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A1Q8WWI5 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A1Q8WWI5 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A1Q8WWI5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 AL354811.1-201ENST00000610286 706 ntBASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 AL136967.2-201ENST00000623968 743 ntBASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A1Q8WWI5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 KRT16P2-201ENST00000414673 1423 ntBASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 AL031432.3-201ENST00000607698 485 ntBASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 KRT87P-202ENST00000534226 1464 ntBASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SLC44A1Q8WWI5 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 AC245052.3-201ENST00000450182 901 ntBASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 AC138907.5-202ENST00000569484 235 ntBASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 MIR2861-201ENST00000636310 90 ntBASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SLC44A1Q8WWI5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SLC44A1Q8WWI5 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SLC44A1Q8WWI5 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms