Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 CBFB-203ENST00000561924 584 ntTSL 5 BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NKX2-3Q8TAU0 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 OR10C1-204ENST00000622521 1039 ntBASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.37■■□□□ 1.49
NKX2-3Q8TAU0 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 AL355472.2-201ENST00000422958 438 ntBASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 PHB2-213ENST00000546111 858 ntTSL 2 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NKX2-3Q8TAU0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 AC006058.3-201ENST00000606217 1069 ntBASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
NKX2-3Q8TAU0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 AL512625.2-201ENST00000417533 625 ntBASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 AC097658.1-201ENST00000475555 843 ntBASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 UNC93B4-201ENST00000505679 747 ntBASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC24.34■■□□□ 1.49
NKX2-3Q8TAU0 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 AC128676.1-201ENST00000454392 318 ntBASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 AC008694.1-202ENST00000636953 945 ntBASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC24.33■■□□□ 1.49
NKX2-3Q8TAU0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
NKX2-3Q8TAU0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
NKX2-3Q8TAU0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 AC116050.2-201ENST00000612102 1779 ntBASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC24.32■■□□□ 1.48
NKX2-3Q8TAU0 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms