Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC6.3□□□□□ -1.4
SYNE1Q8NF91 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 AC003102.1-202ENST00000563394 1796 ntBASIC6.29□□□□□ -1.4
SYNE1Q8NF91 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 ECEL1P3-201ENST00000427961 737 ntBASIC6.29□□□□□ -1.4
SYNE1Q8NF91 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 BAALC-201ENST00000297574 801 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 AC068473.5-201ENST00000616428 2072 ntBASIC6.29□□□□□ -1.4
SYNE1Q8NF91 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 POU5F1P4-201ENST00000413175 1085 ntBASIC6.29□□□□□ -1.4
SYNE1Q8NF91 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 C1QBPP2-201ENST00000528754 825 ntBASIC6.29□□□□□ -1.4
SYNE1Q8NF91 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 FGF8-207ENST00000618991 856 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 MME-217ENST00000616757 1315 ntTSL 5 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 AL589743.5-201ENST00000616611 1050 ntBASIC6.29□□□□□ -1.4
SYNE1Q8NF91 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SYNE1Q8NF91 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
SYNE1Q8NF91 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms