Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
VRK3Q8IV63 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.09■□□□□ 0.81
VRK3Q8IV63 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
VRK3Q8IV63 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
VRK3Q8IV63 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.08■□□□□ 0.81
VRK3Q8IV63 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.08■□□□□ 0.81
VRK3Q8IV63 AC093787.1-201ENST00000450396 207 ntBASIC20.08■□□□□ 0.81
VRK3Q8IV63 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.08■□□□□ 0.81
VRK3Q8IV63 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
VRK3Q8IV63 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.08■□□□□ 0.81
VRK3Q8IV63 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.08■□□□□ 0.81
VRK3Q8IV63 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VRK3Q8IV63 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VRK3Q8IV63 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
VRK3Q8IV63 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VRK3Q8IV63 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.08■□□□□ 0.8
VRK3Q8IV63 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
VRK3Q8IV63 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VRK3Q8IV63 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 AC090192.1-201ENST00000517740 490 ntBASIC20.06■□□□□ 0.8
VRK3Q8IV63 AC069236.1-201ENST00000604339 616 ntBASIC20.06■□□□□ 0.8
VRK3Q8IV63 MIR2861-201ENST00000636310 90 ntBASIC20.06■□□□□ 0.8
VRK3Q8IV63 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.06■□□□□ 0.8
VRK3Q8IV63 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VRK3Q8IV63 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.05■□□□□ 0.8
VRK3Q8IV63 CYP21A1P-202ENST00000354927 1481 ntBASIC20.05■□□□□ 0.8
VRK3Q8IV63 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.05■□□□□ 0.8
VRK3Q8IV63 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.05■□□□□ 0.8
VRK3Q8IV63 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VRK3Q8IV63 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.05■□□□□ 0.8
VRK3Q8IV63 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
VRK3Q8IV63 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VRK3Q8IV63 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.04■□□□□ 0.8
VRK3Q8IV63 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms