Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC12.88□□□□□ -0.35
HSPG2P98160 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC12.88□□□□□ -0.35
HSPG2P98160 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 INGX-201ENST00000359239 846 ntBASIC12.88□□□□□ -0.35
HSPG2P98160 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC12.88□□□□□ -0.35
HSPG2P98160 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC12.88□□□□□ -0.35
HSPG2P98160 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
HSPG2P98160 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC12.88□□□□□ -0.35
HSPG2P98160 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC12.88□□□□□ -0.35
HSPG2P98160 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
HSPG2P98160 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC12.87□□□□□ -0.35
HSPG2P98160 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
HSPG2P98160 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
HSPG2P98160 CYP21A1P-202ENST00000354927 1481 ntBASIC12.87□□□□□ -0.35
HSPG2P98160 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
HSPG2P98160 PTPA-214ENST00000423100 988 ntTSL 2 BASIC12.87□□□□□ -0.35
HSPG2P98160 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC12.87□□□□□ -0.35
HSPG2P98160 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 GPALPP1-207ENST00000611650 899 ntBASIC12.87□□□□□ -0.35
HSPG2P98160 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC12.87□□□□□ -0.35
HSPG2P98160 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
HSPG2P98160 AC142381.3-201ENST00000568208 1670 ntBASIC12.87□□□□□ -0.35
HSPG2P98160 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
HSPG2P98160 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC12.87□□□□□ -0.35
HSPG2P98160 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC12.87□□□□□ -0.35
HSPG2P98160 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 AC092068.2-201ENST00000590491 1708 ntBASIC12.87□□□□□ -0.35
HSPG2P98160 LINC01124-201ENST00000409786 2117 ntBASIC12.87□□□□□ -0.35
HSPG2P98160 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
HSPG2P98160 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
HSPG2P98160 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC12.86□□□□□ -0.35
HSPG2P98160 AL358472.4-201ENST00000633140 710 ntBASIC12.86□□□□□ -0.35
HSPG2P98160 AP000550.4-202ENST00000639755 178 ntBASIC12.86□□□□□ -0.35
HSPG2P98160 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC12.86□□□□□ -0.35
HSPG2P98160 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
HSPG2P98160 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 FAM8A6P-201ENST00000407496 1135 ntBASIC12.86□□□□□ -0.35
HSPG2P98160 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC12.86□□□□□ -0.35
HSPG2P98160 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC12.86□□□□□ -0.35
HSPG2P98160 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 NFE2L3P1-201ENST00000588207 1959 ntBASIC12.86□□□□□ -0.35
HSPG2P98160 AC007322.3-201ENST00000426526 701 ntBASIC12.86□□□□□ -0.35
HSPG2P98160 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC12.86□□□□□ -0.35
HSPG2P98160 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC12.86□□□□□ -0.35
HSPG2P98160 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC12.86□□□□□ -0.35
HSPG2P98160 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HSPG2P98160 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC12.86□□□□□ -0.35
HSPG2P98160 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC12.86□□□□□ -0.35
HSPG2P98160 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
HSPG2P98160 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
HSPG2P98160 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC12.85□□□□□ -0.35
HSPG2P98160 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC12.85□□□□□ -0.35
HSPG2P98160 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC12.85□□□□□ -0.35
HSPG2P98160 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
HSPG2P98160 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC12.85□□□□□ -0.35
HSPG2P98160 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC12.85□□□□□ -0.35
HSPG2P98160 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC12.85□□□□□ -0.35
HSPG2P98160 AC022616.7-201ENST00000525383 220 ntBASIC12.85□□□□□ -0.35
HSPG2P98160 AC091076.1-201ENST00000610741 619 ntBASIC12.85□□□□□ -0.35
HSPG2P98160 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC12.85□□□□□ -0.35
HSPG2P98160 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC12.85□□□□□ -0.35
HSPG2P98160 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
HSPG2P98160 AC116562.2-201ENST00000507042 360 ntBASIC12.85□□□□□ -0.35
HSPG2P98160 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC12.85□□□□□ -0.35
HSPG2P98160 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
HSPG2P98160 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
HSPG2P98160 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms