Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.05■□□□□ 0
PRKDCP78527 AC006538.3-201ENST00000612495 578 ntBASIC15.05■□□□□ 0
PRKDCP78527 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PRKDCP78527 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.05■□□□□ -0
PRKDCP78527 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.05■□□□□ -0
PRKDCP78527 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PRKDCP78527 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PRKDCP78527 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
PRKDCP78527 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PRKDCP78527 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC15.05■□□□□ -0
PRKDCP78527 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PRKDCP78527 KRT8P10-201ENST00000450021 1447 ntBASIC15.04■□□□□ -0
PRKDCP78527 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PRKDCP78527 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC15.04■□□□□ -0
PRKDCP78527 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PRKDCP78527 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC15.04■□□□□ -0
PRKDCP78527 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PRKDCP78527 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.04■□□□□ -0
PRKDCP78527 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.04■□□□□ -0
PRKDCP78527 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
PRKDCP78527 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC15.04■□□□□ -0
PRKDCP78527 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.04■□□□□ -0
PRKDCP78527 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC15.04■□□□□ -0
PRKDCP78527 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC15.04■□□□□ -0
PRKDCP78527 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC15.04■□□□□ -0
PRKDCP78527 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PRKDCP78527 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
PRKDCP78527 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC15.04■□□□□ -0
PRKDCP78527 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
PRKDCP78527 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC15.03■□□□□ -0
PRKDCP78527 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.03■□□□□ -0
PRKDCP78527 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.03■□□□□ -0
PRKDCP78527 FAM87A-204ENST00000613235 858 ntBASIC15.03■□□□□ -0
PRKDCP78527 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.03■□□□□ -0
PRKDCP78527 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC15.03■□□□□ -0
PRKDCP78527 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PRKDCP78527 SAPCD2P1-201ENST00000395413 1184 ntBASIC15.03■□□□□ -0
PRKDCP78527 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.03■□□□□ -0
PRKDCP78527 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.03■□□□□ -0
PRKDCP78527 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC15.03■□□□□ -0
PRKDCP78527 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.03■□□□□ -0
PRKDCP78527 INGX-201ENST00000359239 846 ntBASIC15.03■□□□□ -0
PRKDCP78527 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 AC010203.1-204ENST00000548782 407 ntBASIC15.03■□□□□ -0
PRKDCP78527 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.03■□□□□ -0
PRKDCP78527 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PRKDCP78527 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.03■□□□□ -0
PRKDCP78527 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PRKDCP78527 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PRKDCP78527 AC063952.2-201ENST00000498792 1227 ntBASIC15.02■□□□□ -0
PRKDCP78527 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PRKDCP78527 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC15.02■□□□□ -0
PRKDCP78527 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.02■□□□□ -0
PRKDCP78527 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
PRKDCP78527 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC15.02■□□□□ -0
PRKDCP78527 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PRKDCP78527 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PRKDCP78527 AK4P3-201ENST00000418260 669 ntBASIC15.02■□□□□ -0
PRKDCP78527 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.02■□□□□ -0
PRKDCP78527 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.02■□□□□ -0
PRKDCP78527 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.02■□□□□ -0
PRKDCP78527 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
PRKDCP78527 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
PRKDCP78527 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC15.02■□□□□ -0
PRKDCP78527 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC15.02■□□□□ -0
PRKDCP78527 AC003102.1-202ENST00000563394 1796 ntBASIC15.02□□□□□ -0.01
PRKDCP78527 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PRKDCP78527 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PRKDCP78527 AP000593.1-201ENST00000393668 712 ntBASIC15.02□□□□□ -0.01
PRKDCP78527 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC15.02□□□□□ -0.01
PRKDCP78527 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
PRKDCP78527 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC15.02□□□□□ -0.01
PRKDCP78527 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.02□□□□□ -0.01
PRKDCP78527 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.02□□□□□ -0.01
PRKDCP78527 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
PRKDCP78527 AC137767.1-201ENST00000602918 1920 ntBASIC15.02□□□□□ -0.01
PRKDCP78527 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
PRKDCP78527 AC246785.2-201ENST00000432512 513 ntBASIC15.02□□□□□ -0.01
PRKDCP78527 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.02□□□□□ -0.01
PRKDCP78527 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
PRKDCP78527 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
PRKDCP78527 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms