Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.63■□□□□ 0.73
VSX2P58304 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.63■□□□□ 0.73
VSX2P58304 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VSX2P58304 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.63■□□□□ 0.73
VSX2P58304 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VSX2P58304 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VSX2P58304 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
VSX2P58304 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.63■□□□□ 0.73
VSX2P58304 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.63■□□□□ 0.73
VSX2P58304 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VSX2P58304 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VSX2P58304 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VSX2P58304 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.63■□□□□ 0.73
VSX2P58304 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.62■□□□□ 0.73
VSX2P58304 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
VSX2P58304 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VSX2P58304 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VSX2P58304 MCRIP2P1-201ENST00000394346 511 ntBASIC19.62■□□□□ 0.73
VSX2P58304 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.62■□□□□ 0.73
VSX2P58304 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.62■□□□□ 0.73
VSX2P58304 AC098934.4-201ENST00000564127 592 ntBASIC19.62■□□□□ 0.73
VSX2P58304 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.62■□□□□ 0.73
VSX2P58304 MIR4758-201ENST00000577688 71 ntBASIC19.62■□□□□ 0.73
VSX2P58304 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.62■□□□□ 0.73
VSX2P58304 AC100791.3-201ENST00000617619 330 ntBASIC19.62■□□□□ 0.73
VSX2P58304 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.62■□□□□ 0.73
VSX2P58304 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VSX2P58304 AC011484.1-201ENST00000377652 1995 ntBASIC19.62■□□□□ 0.73
VSX2P58304 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VSX2P58304 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VSX2P58304 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.62■□□□□ 0.73
VSX2P58304 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VSX2P58304 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.61■□□□□ 0.73
VSX2P58304 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VSX2P58304 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.61■□□□□ 0.73
VSX2P58304 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.61■□□□□ 0.73
VSX2P58304 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.61■□□□□ 0.73
VSX2P58304 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.61■□□□□ 0.73
VSX2P58304 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.61■□□□□ 0.73
VSX2P58304 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
VSX2P58304 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VSX2P58304 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
VSX2P58304 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.6■□□□□ 0.73
VSX2P58304 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.6■□□□□ 0.73
VSX2P58304 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.6■□□□□ 0.73
VSX2P58304 AC121338.2-201ENST00000622535 1744 ntBASIC19.6■□□□□ 0.73
VSX2P58304 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.6■□□□□ 0.73
VSX2P58304 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 LSM12P1-201ENST00000411836 588 ntBASIC19.6■□□□□ 0.73
VSX2P58304 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.6■□□□□ 0.73
VSX2P58304 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 CYP2T3P-201ENST00000601990 817 ntBASIC19.6■□□□□ 0.73
VSX2P58304 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.6■□□□□ 0.73
VSX2P58304 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 CYP21A1P-202ENST00000354927 1481 ntBASIC19.6■□□□□ 0.73
VSX2P58304 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VSX2P58304 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.59■□□□□ 0.73
VSX2P58304 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VSX2P58304 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 AC069152.1-201ENST00000438030 544 ntBASIC19.59■□□□□ 0.73
VSX2P58304 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.59■□□□□ 0.73
VSX2P58304 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
VSX2P58304 AC133041.1-202ENST00000642053 222 ntBASIC19.59■□□□□ 0.73
VSX2P58304 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 KRT17P1-201ENST00000399211 1546 ntBASIC19.59■□□□□ 0.73
VSX2P58304 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VSX2P58304 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.59■□□□□ 0.73
VSX2P58304 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VSX2P58304 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.59■□□□□ 0.73
VSX2P58304 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VSX2P58304 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VSX2P58304 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VSX2P58304 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
VSX2P58304 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
VSX2P58304 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VSX2P58304 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
VSX2P58304 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VSX2P58304 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VSX2P58304 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms