Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CDX1P47902 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX1P47902 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.63■□□□□ 0.25
CDX1P47902 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.63■□□□□ 0.25
CDX1P47902 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC16.63■□□□□ 0.25
CDX1P47902 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC16.63■□□□□ 0.25
CDX1P47902 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 AC004854.2-201ENST00000608450 1441 ntBASIC16.62■□□□□ 0.25
CDX1P47902 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
CDX1P47902 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX1P47902 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC16.62■□□□□ 0.25
CDX1P47902 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
CDX1P47902 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC16.62■□□□□ 0.25
CDX1P47902 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 IKBKGP1-201ENST00000612193 1073 ntBASIC16.62■□□□□ 0.25
CDX1P47902 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDX1P47902 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.62■□□□□ 0.25
CDX1P47902 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
CDX1P47902 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.62■□□□□ 0.25
CDX1P47902 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDX1P47902 AC055733.4-201ENST00000638462 1354 ntBASIC16.62■□□□□ 0.25
CDX1P47902 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CDX1P47902 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 KRT87P-202ENST00000534226 1464 ntBASIC16.61■□□□□ 0.25
CDX1P47902 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX1P47902 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX1P47902 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX1P47902 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX1P47902 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC16.61■□□□□ 0.25
CDX1P47902 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC16.61■□□□□ 0.25
CDX1P47902 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX1P47902 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC16.61■□□□□ 0.25
CDX1P47902 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC16.61■□□□□ 0.25
CDX1P47902 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.61■□□□□ 0.25
CDX1P47902 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
CDX1P47902 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX1P47902 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.61■□□□□ 0.25
CDX1P47902 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDX1P47902 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CDX1P47902 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
CDX1P47902 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CDX1P47902 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CDX1P47902 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
CDX1P47902 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC16.6■□□□□ 0.25
CDX1P47902 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.6■□□□□ 0.25
CDX1P47902 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC16.6■□□□□ 0.25
CDX1P47902 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.6■□□□□ 0.25
CDX1P47902 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDX1P47902 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.59■□□□□ 0.25
CDX1P47902 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 AC244015.2-201ENST00000616358 1861 ntBASIC16.59■□□□□ 0.25
CDX1P47902 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 FEM1AP1-201ENST00000431297 1995 ntBASIC16.59■□□□□ 0.25
CDX1P47902 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CDX1P47902 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC16.59■□□□□ 0.25
CDX1P47902 AC016769.1-201ENST00000409132 1010 ntBASIC16.59■□□□□ 0.25
CDX1P47902 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC16.59■□□□□ 0.25
CDX1P47902 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms