Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 AC016405.3-201ENST00000607710 860 ntBASIC20.72■□□□□ 0.91
CHRNA4P43681 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.72■□□□□ 0.91
CHRNA4P43681 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.72■□□□□ 0.91
CHRNA4P43681 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA4P43681 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
CHRNA4P43681 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CHRNA4P43681 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CHRNA4P43681 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.71■□□□□ 0.91
CHRNA4P43681 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.71■□□□□ 0.91
CHRNA4P43681 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.71■□□□□ 0.91
CHRNA4P43681 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.71■□□□□ 0.91
CHRNA4P43681 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.71■□□□□ 0.91
CHRNA4P43681 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
CHRNA4P43681 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CHRNA4P43681 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CHRNA4P43681 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.7■□□□□ 0.91
CHRNA4P43681 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
CHRNA4P43681 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHRNA4P43681 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHRNA4P43681 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CHRNA4P43681 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHRNA4P43681 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.7■□□□□ 0.9
CHRNA4P43681 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHRNA4P43681 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
CHRNA4P43681 AL591742.1-201ENST00000604433 565 ntBASIC20.7■□□□□ 0.9
CHRNA4P43681 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.7■□□□□ 0.9
CHRNA4P43681 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHRNA4P43681 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHRNA4P43681 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.7■□□□□ 0.9
CHRNA4P43681 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
CHRNA4P43681 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CHRNA4P43681 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
CHRNA4P43681 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.69■□□□□ 0.9
CHRNA4P43681 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.69■□□□□ 0.9
CHRNA4P43681 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.69■□□□□ 0.9
CHRNA4P43681 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.69■□□□□ 0.9
CHRNA4P43681 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 AC007322.4-201ENST00000509611 723 ntBASIC20.69■□□□□ 0.9
CHRNA4P43681 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.69■□□□□ 0.9
CHRNA4P43681 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.69■□□□□ 0.9
CHRNA4P43681 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
CHRNA4P43681 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.69■□□□□ 0.9
CHRNA4P43681 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHRNA4P43681 AC068338.2-201ENST00000563278 1430 ntBASIC20.69■□□□□ 0.9
CHRNA4P43681 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.69■□□□□ 0.9
CHRNA4P43681 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CHRNA4P43681 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
CHRNA4P43681 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.68■□□□□ 0.9
CHRNA4P43681 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CHRNA4P43681 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.68■□□□□ 0.9
CHRNA4P43681 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
CHRNA4P43681 CDV3P1-201ENST00000471403 739 ntBASIC20.68■□□□□ 0.9
CHRNA4P43681 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
CHRNA4P43681 AL137784.2-201ENST00000607332 1000 ntBASIC20.68■□□□□ 0.9
CHRNA4P43681 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.68■□□□□ 0.9
CHRNA4P43681 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.68■□□□□ 0.9
CHRNA4P43681 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
CHRNA4P43681 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHRNA4P43681 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CHRNA4P43681 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.67■□□□□ 0.9
CHRNA4P43681 AP005212.1-201ENST00000581547 1997 ntBASIC20.67■□□□□ 0.9
CHRNA4P43681 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.67■□□□□ 0.9
CHRNA4P43681 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
CHRNA4P43681 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CHRNA4P43681 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.67■□□□□ 0.9
CHRNA4P43681 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.67■□□□□ 0.9
CHRNA4P43681 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CHRNA4P43681 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
CHRNA4P43681 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CHRNA4P43681 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.67■□□□□ 0.9
CHRNA4P43681 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHRNA4P43681 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.67■□□□□ 0.9
CHRNA4P43681 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms