Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
VIMP08670 AL033527.3-201ENST00000566366 1196 ntBASIC20.57■□□□□ 0.88
VIMP08670 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 AC120498.9-201ENST00000339021 3867 ntBASIC20.57■□□□□ 0.88
VIMP08670 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VIMP08670 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.56■□□□□ 0.88
VIMP08670 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.56■□□□□ 0.88
VIMP08670 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.56■□□□□ 0.88
VIMP08670 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.56■□□□□ 0.88
VIMP08670 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.56■□□□□ 0.88
VIMP08670 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.56■□□□□ 0.88
VIMP08670 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.56■□□□□ 0.88
VIMP08670 AP006587.3-201ENST00000525742 1516 ntBASIC20.56■□□□□ 0.88
VIMP08670 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VIMP08670 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.56■□□□□ 0.88
VIMP08670 AL158211.5-201ENST00000623583 2518 ntBASIC20.56■□□□□ 0.88
VIMP08670 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.56■□□□□ 0.88
VIMP08670 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VIMP08670 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VIMP08670 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
VIMP08670 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
VIMP08670 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 AC006455.2-201ENST00000429931 906 ntBASIC20.55■□□□□ 0.88
VIMP08670 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.55■□□□□ 0.88
VIMP08670 AL117332.1-201ENST00000622628 974 ntBASIC20.55■□□□□ 0.88
VIMP08670 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
VIMP08670 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VIMP08670 TNXA-203ENST00000507684 2038 ntBASIC20.54■□□□□ 0.88
VIMP08670 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.54■□□□□ 0.88
VIMP08670 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
VIMP08670 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.54■□□□□ 0.88
VIMP08670 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VIMP08670 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.54■□□□□ 0.88
VIMP08670 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.54■□□□□ 0.88
VIMP08670 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
VIMP08670 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VIMP08670 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VIMP08670 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VIMP08670 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.53■□□□□ 0.88
VIMP08670 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.53■□□□□ 0.88
VIMP08670 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.53■□□□□ 0.88
VIMP08670 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VIMP08670 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
VIMP08670 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VIMP08670 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VIMP08670 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
VIMP08670 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.53■□□□□ 0.88
VIMP08670 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VIMP08670 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.88
VIMP08670 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
VIMP08670 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VIMP08670 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.52■□□□□ 0.88
VIMP08670 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms