Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.11■□□□□ 0.81
SDC3O75056 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.11■□□□□ 0.81
SDC3O75056 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.11■□□□□ 0.81
SDC3O75056 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.11■□□□□ 0.81
SDC3O75056 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.11■□□□□ 0.81
SDC3O75056 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.11■□□□□ 0.81
SDC3O75056 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.11■□□□□ 0.81
SDC3O75056 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SDC3O75056 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SDC3O75056 RN7SL471P-201ENST00000580476 299 ntBASIC20.1■□□□□ 0.81
SDC3O75056 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.1■□□□□ 0.81
SDC3O75056 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SDC3O75056 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SDC3O75056 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.1■□□□□ 0.81
SDC3O75056 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SDC3O75056 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SDC3O75056 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 C2orf69P4-201ENST00000565394 541 ntBASIC20.09■□□□□ 0.81
SDC3O75056 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.09■□□□□ 0.81
SDC3O75056 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.09■□□□□ 0.81
SDC3O75056 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.09■□□□□ 0.81
SDC3O75056 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.09■□□□□ 0.81
SDC3O75056 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SDC3O75056 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SDC3O75056 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SDC3O75056 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SDC3O75056 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SDC3O75056 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.08■□□□□ 0.81
SDC3O75056 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.08■□□□□ 0.81
SDC3O75056 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SDC3O75056 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
SDC3O75056 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.08■□□□□ 0.81
SDC3O75056 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.08■□□□□ 0.81
SDC3O75056 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.08■□□□□ 0.81
SDC3O75056 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SDC3O75056 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SDC3O75056 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.08■□□□□ 0.8
SDC3O75056 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SDC3O75056 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SDC3O75056 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.07■□□□□ 0.8
SDC3O75056 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 POM121L13P-201ENST00000422362 380 ntBASIC20.07■□□□□ 0.8
SDC3O75056 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.07■□□□□ 0.8
SDC3O75056 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.07■□□□□ 0.8
SDC3O75056 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SDC3O75056 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
SDC3O75056 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.07■□□□□ 0.8
SDC3O75056 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SDC3O75056 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SDC3O75056 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.06■□□□□ 0.8
SDC3O75056 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.06■□□□□ 0.8
SDC3O75056 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.06■□□□□ 0.8
SDC3O75056 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.06■□□□□ 0.8
SDC3O75056 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.06■□□□□ 0.8
SDC3O75056 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.06■□□□□ 0.8
SDC3O75056 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SDC3O75056 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 MIR718-201ENST00000390190 70 ntBASIC20.06■□□□□ 0.8
SDC3O75056 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SDC3O75056 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms