Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LMX1BO60663 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.01■□□□□ 0.47
LMX1BO60663 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.01■□□□□ 0.47
LMX1BO60663 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.01■□□□□ 0.47
LMX1BO60663 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
LMX1BO60663 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.01■□□□□ 0.47
LMX1BO60663 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.01■□□□□ 0.47
LMX1BO60663 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
LMX1BO60663 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 CROCCP5-201ENST00000436658 830 ntBASIC18.01■□□□□ 0.47
LMX1BO60663 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.01■□□□□ 0.47
LMX1BO60663 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.01■□□□□ 0.47
LMX1BO60663 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.01■□□□□ 0.47
LMX1BO60663 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.01■□□□□ 0.47
LMX1BO60663 AC011767.1-201ENST00000617410 1153 ntBASIC18.01■□□□□ 0.47
LMX1BO60663 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.01■□□□□ 0.47
LMX1BO60663 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.01■□□□□ 0.47
LMX1BO60663 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
LMX1BO60663 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1BO60663 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
LMX1BO60663 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1BO60663 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18■□□□□ 0.47
LMX1BO60663 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18■□□□□ 0.47
LMX1BO60663 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18■□□□□ 0.47
LMX1BO60663 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 EEF1DP3-203ENST00000566025 782 ntBASIC18■□□□□ 0.47
LMX1BO60663 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1BO60663 MDK-213ENST00000617138 635 ntTSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LMX1BO60663 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18■□□□□ 0.47
LMX1BO60663 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18■□□□□ 0.47
LMX1BO60663 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
LMX1BO60663 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 ABHD17AP1-201ENST00000358206 933 ntBASIC17.99■□□□□ 0.47
LMX1BO60663 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.99■□□□□ 0.47
LMX1BO60663 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
LMX1BO60663 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 NCF1B-203ENST00000435988 1254 ntBASIC17.99■□□□□ 0.47
LMX1BO60663 SPI1-203ENST00000533030 661 ntTSL 2 BASIC17.99■□□□□ 0.47
LMX1BO60663 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 FP700111.2-201ENST00000619190 1892 ntBASIC17.99■□□□□ 0.47
LMX1BO60663 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LMX1BO60663 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
LMX1BO60663 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
LMX1BO60663 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
LMX1BO60663 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.98■□□□□ 0.47
LMX1BO60663 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.98■□□□□ 0.47
LMX1BO60663 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.98■□□□□ 0.47
LMX1BO60663 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
LMX1BO60663 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LMX1BO60663 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.97■□□□□ 0.47
LMX1BO60663 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.97■□□□□ 0.47
LMX1BO60663 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1BO60663 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1BO60663 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1BO60663 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.97■□□□□ 0.47
LMX1BO60663 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LMX1BO60663 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1BO60663 GPX1P1-201ENST00000388829 606 ntBASIC17.97■□□□□ 0.47
LMX1BO60663 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC17.97■□□□□ 0.47
LMX1BO60663 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC17.97■□□□□ 0.47
LMX1BO60663 AC053503.5-201ENST00000601508 636 ntBASIC17.97■□□□□ 0.47
LMX1BO60663 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LMX1BO60663 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms