Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXN3O00409 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXN3O00409 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.99■■□□□ 1.11
FOXN3O00409 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
FOXN3O00409 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.99■■□□□ 1.11
FOXN3O00409 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.99■■□□□ 1.11
FOXN3O00409 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.99■■□□□ 1.11
FOXN3O00409 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.99■■□□□ 1.11
FOXN3O00409 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
FOXN3O00409 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.99■■□□□ 1.11
FOXN3O00409 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
FOXN3O00409 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
FOXN3O00409 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
FOXN3O00409 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.99■■□□□ 1.11
FOXN3O00409 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
FOXN3O00409 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXN3O00409 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
FOXN3O00409 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.98■■□□□ 1.11
FOXN3O00409 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.98■■□□□ 1.11
FOXN3O00409 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXN3O00409 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXN3O00409 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXN3O00409 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.98■■□□□ 1.11
FOXN3O00409 MIR2861-201ENST00000636310 90 ntBASIC21.98■■□□□ 1.11
FOXN3O00409 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.98■■□□□ 1.11
FOXN3O00409 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.98■■□□□ 1.11
FOXN3O00409 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
FOXN3O00409 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.97■■□□□ 1.11
FOXN3O00409 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
FOXN3O00409 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 AC007322.3-201ENST00000426526 701 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
FOXN3O00409 TERF1P5-201ENST00000477545 1207 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 AC137761.2-201ENST00000561729 223 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 AC145350.3-201ENST00000569033 163 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
FOXN3O00409 AC010536.3-201ENST00000620306 533 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
FOXN3O00409 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 SLC25A24-204ENST00000569674 2357 ntBASIC21.97■■□□□ 1.11
FOXN3O00409 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
FOXN3O00409 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.96■■□□□ 1.11
FOXN3O00409 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.96■■□□□ 1.11
FOXN3O00409 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
FOXN3O00409 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.96■■□□□ 1.11
FOXN3O00409 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.96■■□□□ 1.11
FOXN3O00409 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
FOXN3O00409 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
FOXN3O00409 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
FOXN3O00409 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.96■■□□□ 1.11
FOXN3O00409 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
FOXN3O00409 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.95■■□□□ 1.1
FOXN3O00409 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
FOXN3O00409 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.95■■□□□ 1.1
FOXN3O00409 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.95■■□□□ 1.1
FOXN3O00409 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.95■■□□□ 1.1
FOXN3O00409 AL512408.1-201ENST00000569378 2000 ntBASIC21.95■■□□□ 1.1
FOXN3O00409 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.95■■□□□ 1.1
FOXN3O00409 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
FOXN3O00409 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
FOXN3O00409 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.95■■□□□ 1.1
FOXN3O00409 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
FOXN3O00409 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.94■■□□□ 1.1
FOXN3O00409 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
FOXN3O00409 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
FOXN3O00409 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms