Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
AP3B1O00203 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
AP3B1O00203 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.71■□□□□ 0.91
AP3B1O00203 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.71■□□□□ 0.91
AP3B1O00203 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.71■□□□□ 0.91
AP3B1O00203 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.71■□□□□ 0.91
AP3B1O00203 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
AP3B1O00203 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
AP3B1O00203 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
AP3B1O00203 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.7■□□□□ 0.9
AP3B1O00203 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.7■□□□□ 0.9
AP3B1O00203 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
AP3B1O00203 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.7■□□□□ 0.9
AP3B1O00203 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.7■□□□□ 0.9
AP3B1O00203 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
AP3B1O00203 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
AP3B1O00203 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
AP3B1O00203 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
AP3B1O00203 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
AP3B1O00203 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.69■□□□□ 0.9
AP3B1O00203 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 AC034268.1-201ENST00000441047 882 ntBASIC20.69■□□□□ 0.9
AP3B1O00203 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 FAM21FP-204ENST00000608637 956 ntBASIC20.69■□□□□ 0.9
AP3B1O00203 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
AP3B1O00203 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
AP3B1O00203 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
AP3B1O00203 AC073130.3-201ENST00000624389 2278 ntBASIC20.69■□□□□ 0.9
AP3B1O00203 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
AP3B1O00203 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
AP3B1O00203 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
AP3B1O00203 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.68■□□□□ 0.9
AP3B1O00203 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.68■□□□□ 0.9
AP3B1O00203 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.68■□□□□ 0.9
AP3B1O00203 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
AP3B1O00203 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
AP3B1O00203 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
AP3B1O00203 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
AP3B1O00203 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
AP3B1O00203 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
AP3B1O00203 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP3B1O00203 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP3B1O00203 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.67■□□□□ 0.9
AP3B1O00203 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.67■□□□□ 0.9
AP3B1O00203 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.67■□□□□ 0.9
AP3B1O00203 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
AP3B1O00203 AC092667.1-201ENST00000434301 2586 ntBASIC20.67■□□□□ 0.9
AP3B1O00203 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
AP3B1O00203 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
AP3B1O00203 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
AP3B1O00203 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
AP3B1O00203 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
AP3B1O00203 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.67■□□□□ 0.9
AP3B1O00203 AC097381.1-201ENST00000429019 1296 ntBASIC20.67■□□□□ 0.9
AP3B1O00203 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
AP3B1O00203 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.67■□□□□ 0.9
AP3B1O00203 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.67■□□□□ 0.9
AP3B1O00203 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.67■□□□□ 0.9
AP3B1O00203 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms