Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.31■■□□□ 1
CCDC188H7C350 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CCDC188H7C350 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CCDC188H7C350 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.31■■□□□ 1
CCDC188H7C350 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.31■■□□□ 1
CCDC188H7C350 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.31■■□□□ 1
CCDC188H7C350 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.31■■□□□ 1
CCDC188H7C350 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CCDC188H7C350 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.3■■□□□ 1
CCDC188H7C350 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.3■■□□□ 1
CCDC188H7C350 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.3■■□□□ 1
CCDC188H7C350 RNF165-205ENST00000588679 2904 ntBASIC21.3■■□□□ 1
CCDC188H7C350 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CCDC188H7C350 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 UNC93B3-201ENST00000308076 687 ntBASIC21.3■■□□□ 1
CCDC188H7C350 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
CCDC188H7C350 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CCDC188H7C350 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.3■■□□□ 1
CCDC188H7C350 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.29■■□□□ 1
CCDC188H7C350 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.29■■□□□ 1
CCDC188H7C350 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.29■■□□□ 1
CCDC188H7C350 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.29■■□□□ 1
CCDC188H7C350 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
CCDC188H7C350 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.29■■□□□ 1
CCDC188H7C350 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC188H7C350 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.28■■□□□ 1
CCDC188H7C350 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 POU5F1P4-201ENST00000413175 1085 ntBASIC21.28■■□□□ 1
CCDC188H7C350 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CCDC188H7C350 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.28■■□□□ 1
CCDC188H7C350 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC188H7C350 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.28■■□□□ 1
CCDC188H7C350 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.28■■□□□ 1
CCDC188H7C350 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.27■■□□□ 1
CCDC188H7C350 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.27■■□□□ 1
CCDC188H7C350 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.27■■□□□ 1
CCDC188H7C350 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC188H7C350 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC188H7C350 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC188H7C350 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC188H7C350 AC024257.2-201ENST00000549699 147 ntBASIC21.27■■□□□ 1
CCDC188H7C350 AC008175.2-201ENST00000612840 297 ntBASIC21.27■■□□□ 1
CCDC188H7C350 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC188H7C350 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.27■■□□□ 1
CCDC188H7C350 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC188H7C350 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.27■■□□□ 1
CCDC188H7C350 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC188H7C350 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC188H7C350 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC188H7C350 TSPY26P-201ENST00000476365 1326 ntBASIC21.27■□□□□ 0.99
CCDC188H7C350 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC188H7C350 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC188H7C350 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.26■□□□□ 0.99
CCDC188H7C350 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CCDC188H7C350 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CCDC188H7C350 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 BX323043.1-201ENST00000641006 1765 ntBASIC21.26■□□□□ 0.99
CCDC188H7C350 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC188H7C350 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms