Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 RNF152P1-201ENST00000397754 604 ntBASIC16.14■□□□□ 0.17
COL6A5A8TX70 KRT16P5-201ENST00000455284 522 ntBASIC16.14■□□□□ 0.17
COL6A5A8TX70 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL6A5A8TX70 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
COL6A5A8TX70 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 HTR7P1-201ENST00000538670 1336 ntBASIC16.13■□□□□ 0.17
COL6A5A8TX70 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL6A5A8TX70 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A5A8TX70 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A5A8TX70 LIN28AP1-201ENST00000429574 405 ntBASIC16.13■□□□□ 0.17
COL6A5A8TX70 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.13■□□□□ 0.17
COL6A5A8TX70 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.13■□□□□ 0.17
COL6A5A8TX70 PVRIG2P-201ENST00000435460 978 ntBASIC16.13■□□□□ 0.17
COL6A5A8TX70 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL6A5A8TX70 AC116407.4-201ENST00000623319 1061 ntBASIC16.13■□□□□ 0.17
COL6A5A8TX70 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC16.13■□□□□ 0.17
COL6A5A8TX70 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A5A8TX70 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A5A8TX70 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A5A8TX70 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 ABCB10P4-201ENST00000566803 2184 ntBASIC16.12■□□□□ 0.17
COL6A5A8TX70 NBPF21P-201ENST00000425093 1451 ntBASIC16.12■□□□□ 0.17
COL6A5A8TX70 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A5A8TX70 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A5A8TX70 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC16.12■□□□□ 0.17
COL6A5A8TX70 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 AC245052.3-201ENST00000450182 901 ntBASIC16.11■□□□□ 0.17
COL6A5A8TX70 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 AL121956.5-201ENST00000625261 221 ntBASIC16.11■□□□□ 0.17
COL6A5A8TX70 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 AC246785.2-201ENST00000432512 513 ntBASIC16.11■□□□□ 0.17
COL6A5A8TX70 ECEL1P2-202ENST00000465689 757 ntBASIC16.11■□□□□ 0.17
COL6A5A8TX70 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 FAM87A-204ENST00000613235 858 ntBASIC16.11■□□□□ 0.17
COL6A5A8TX70 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A5A8TX70 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL6A5A8TX70 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A5A8TX70 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A5A8TX70 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms