Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRAV40A0A0B4J280 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 UNC93B5-201ENST00000530315 699 ntBASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 AP003097.1-201ENST00000530657 1135 ntBASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 AC060766.5-201ENST00000590539 871 ntBASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 AC008687.6-201ENST00000596318 630 ntBASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 AC006058.3-201ENST00000606217 1069 ntBASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV40A0A0B4J280 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 AC066615.1-201ENST00000640911 628 ntBASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 EP400NL-214ENST00000641289 2402 ntBASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV40A0A0B4J280 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 AC244015.2-201ENST00000616358 1861 ntBASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 PRORSD1P-201ENST00000295112 541 ntBASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 HLA-B-256ENST00000639848 1089 ntBASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV40A0A0B4J280 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.7■□□□□ 0.26
TRAV40A0A0B4J280 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms