Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.71■□□□□ 0.75
VPS29Q9UBQ0 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 AC020907.5-201ENST00000624372 1936 ntBASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 AC243732.1-201ENST00000612648 864 ntBASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS29Q9UBQ0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VPS29Q9UBQ0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 RBM17P2-201ENST00000616397 1405 ntBASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 KRT18P61-201ENST00000585825 1298 ntBASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 AC019069.1-201ENST00000610008 1333 ntBASIC19.68■□□□□ 0.74
VPS29Q9UBQ0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 AC097381.1-201ENST00000429019 1296 ntBASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
VPS29Q9UBQ0 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS29Q9UBQ0 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms