Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCF1Q9UBD9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 AC087633.2-202ENST00000565166 1439 ntBASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CLCF1Q9UBD9 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 TMEM191A-211ENST00000637163 1067 ntBASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCF1Q9UBD9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 POU5F1P3-201ENST00000428824 1078 ntBASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 FAM201B-201ENST00000458407 597 ntBASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCF1Q9UBD9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CLCF1Q9UBD9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms