Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 AL596275.1-201ENST00000423464 877 ntBASIC24.43■■□□□ 1.5
DDX4Q9NQI0 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 OR2A1-AS1-207ENST00000486094 819 ntBASIC24.43■■□□□ 1.5
DDX4Q9NQI0 RHOD-202ENST00000532559 538 ntTSL 3 BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 TUB-203ENST00000534099 1759 ntTSL 2 BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
DDX4Q9NQI0 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 AP006294.2-201ENST00000641667 209 ntBASIC24.42■■□□□ 1.5
DDX4Q9NQI0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
DDX4Q9NQI0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 USP36-216ENST00000589424 970 ntTSL 5 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 AC133561.1-201ENST00000568600 2415 ntBASIC24.41■■□□□ 1.5
DDX4Q9NQI0 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
DDX4Q9NQI0 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
DDX4Q9NQI0 EP400NL-214ENST00000641289 2402 ntBASIC24.4■■□□□ 1.5
DDX4Q9NQI0 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
DDX4Q9NQI0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
DDX4Q9NQI0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
DDX4Q9NQI0 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
DDX4Q9NQI0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
DDX4Q9NQI0 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 RPS2P4-201ENST00000476944 856 ntBASIC24.39■■□□□ 1.49
DDX4Q9NQI0 RPPH1-201ENST00000516869 333 ntBASIC24.39■■□□□ 1.49
DDX4Q9NQI0 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 AC069544.1-201ENST00000609399 999 ntBASIC24.39■■□□□ 1.49
DDX4Q9NQI0 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 AL117328.2-201ENST00000624617 1940 ntBASIC24.39■■□□□ 1.49
DDX4Q9NQI0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.39■■□□□ 1.49
DDX4Q9NQI0 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 C1QBPP2-201ENST00000528754 825 ntBASIC24.38■■□□□ 1.49
DDX4Q9NQI0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 RN7SL471P-201ENST00000580476 299 ntBASIC24.38■■□□□ 1.49
DDX4Q9NQI0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
DDX4Q9NQI0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC24.37■■□□□ 1.49
DDX4Q9NQI0 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms