Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC26.3■■□□□ 1.8
USP42Q9H9J4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC26.3■■□□□ 1.8
USP42Q9H9J4 NXN-202ENST00000537628 1340 ntTSL 3 BASIC26.3■■□□□ 1.8
USP42Q9H9J4 AC026471.6-201ENST00000622954 1905 ntBASIC26.3■■□□□ 1.8
USP42Q9H9J4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP42Q9H9J4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC26.3■■□□□ 1.8
USP42Q9H9J4 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP42Q9H9J4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP42Q9H9J4 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 MIR1224-201ENST00000408193 85 ntBASIC26.29■■□□□ 1.8
USP42Q9H9J4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 AC105020.6-201ENST00000621523 1217 ntBASIC26.29■■□□□ 1.8
USP42Q9H9J4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP42Q9H9J4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP42Q9H9J4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP42Q9H9J4 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC26.29■■□□□ 1.8
USP42Q9H9J4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
USP42Q9H9J4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 AC012618.2-201ENST00000428058 849 ntBASIC26.28■■□□□ 1.8
USP42Q9H9J4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC26.28■■□□□ 1.8
USP42Q9H9J4 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP42Q9H9J4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.27■■□□□ 1.8
USP42Q9H9J4 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC26.27■■□□□ 1.8
USP42Q9H9J4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC26.27■■□□□ 1.8
USP42Q9H9J4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 AC233702.5-201ENST00000584107 538 ntBASIC26.27■■□□□ 1.8
USP42Q9H9J4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC26.27■■□□□ 1.8
USP42Q9H9J4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC26.27■■□□□ 1.8
USP42Q9H9J4 LINC01023-201ENST00000606054 436 ntBASIC26.27■■□□□ 1.8
USP42Q9H9J4 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
USP42Q9H9J4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
USP42Q9H9J4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
USP42Q9H9J4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.26■■□□□ 1.79
USP42Q9H9J4 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
USP42Q9H9J4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
USP42Q9H9J4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP42Q9H9J4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC26.26■■□□□ 1.79
USP42Q9H9J4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
USP42Q9H9J4 LINC00565-201ENST00000562710 2331 ntBASIC26.25■■□□□ 1.79
USP42Q9H9J4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC26.25■■□□□ 1.79
USP42Q9H9J4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
USP42Q9H9J4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC26.25■■□□□ 1.79
USP42Q9H9J4 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 BX088651.1-201ENST00000540551 451 ntBASIC26.25■■□□□ 1.79
USP42Q9H9J4 REXO2-216ENST00000544196 452 ntTSL 3 BASIC26.25■■□□□ 1.79
USP42Q9H9J4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
USP42Q9H9J4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP42Q9H9J4 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC26.25■■□□□ 1.79
USP42Q9H9J4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
USP42Q9H9J4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
USP42Q9H9J4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC26.24■■□□□ 1.79
USP42Q9H9J4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP42Q9H9J4 AC010542.4-201ENST00000563151 1910 ntBASIC26.24■■□□□ 1.79
USP42Q9H9J4 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP42Q9H9J4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP42Q9H9J4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC26.23■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms