Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
NUCKS1Q9H1E3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
NUCKS1Q9H1E3 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 KRT87P-202ENST00000534226 1464 ntBASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NUCKS1Q9H1E3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 AL162377.1-201ENST00000618844 1793 ntBASIC22.25■■□□□ 1.15
NUCKS1Q9H1E3 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 AC079140.4-201ENST00000507448 529 ntBASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NUCKS1Q9H1E3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 KRT16P2-201ENST00000414673 1423 ntBASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 KRT18P5-201ENST00000436075 1291 ntBASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
NUCKS1Q9H1E3 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
NUCKS1Q9H1E3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
NUCKS1Q9H1E3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NUCKS1Q9H1E3 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NUCKS1Q9H1E3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
NUCKS1Q9H1E3 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NUCKS1Q9H1E3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms