Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 NTF6G-201ENST00000591094 616 ntBASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.26■□□□□ 0.83
TRIM54Q9BYV2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.25■□□□□ 0.83
TRIM54Q9BYV2 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 SLC7A5P1-201ENST00000568957 537 ntBASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
TRIM54Q9BYV2 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 AC011484.1-201ENST00000377652 1995 ntBASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 PLK5-205ENST00000642079 1969 ntBASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 AC087623.3-201ENST00000607047 1098 ntBASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 RARRES2P11-201ENST00000635158 484 ntBASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 LINC01006-201ENST00000333319 2292 ntBASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRIM54Q9BYV2 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 AL121603.2-201ENST00000557373 2117 ntBASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.22■□□□□ 0.83
TRIM54Q9BYV2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM54Q9BYV2 FEM1AP1-201ENST00000431297 1995 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms