Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 GAS7-202ENST00000396115 929 ntTSL 5 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 INO80E-214ENST00000620599 515 ntTSL 2 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.54■■□□□ 1.2
TRAIPQ9BWF2 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 AL589743.5-201ENST00000616611 1050 ntBASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 AC066615.1-201ENST00000640911 628 ntBASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.53■■□□□ 1.2
TRAIPQ9BWF2 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 NME6-213ENST00000451657 871 ntTSL 2 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRAIPQ9BWF2 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.19
TRAIPQ9BWF2 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 KRT18P68-201ENST00000392293 1000 ntBASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 KRT18P29-201ENST00000397031 1267 ntBASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 ESRRAP1-201ENST00000400596 1257 ntBASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 UNC93B5-201ENST00000530315 699 ntBASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 AC008687.6-201ENST00000596318 630 ntBASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
TRAIPQ9BWF2 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRAIPQ9BWF2 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 AC116050.2-201ENST00000612102 1779 ntBASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 PRORSD1P-201ENST00000295112 541 ntBASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 HLA-B-256ENST00000639848 1089 ntBASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
TRAIPQ9BWF2 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms