Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP4Q99727 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP4Q99727 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP4Q99727 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TIMP4Q99727 GUSBP6-202ENST00000438529 1198 ntBASIC18.86■□□□□ 0.61
TIMP4Q99727 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.86■□□□□ 0.61
TIMP4Q99727 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TIMP4Q99727 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.86■□□□□ 0.61
TIMP4Q99727 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP4Q99727 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.86■□□□□ 0.61
TIMP4Q99727 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.86■□□□□ 0.61
TIMP4Q99727 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP4Q99727 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TIMP4Q99727 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.86■□□□□ 0.61
TIMP4Q99727 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
TIMP4Q99727 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TIMP4Q99727 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.85■□□□□ 0.61
TIMP4Q99727 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
TIMP4Q99727 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.85■□□□□ 0.61
TIMP4Q99727 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.85■□□□□ 0.61
TIMP4Q99727 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
TIMP4Q99727 AC105036.2-201ENST00000569468 176 ntBASIC18.85■□□□□ 0.61
TIMP4Q99727 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.85■□□□□ 0.61
TIMP4Q99727 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.85■□□□□ 0.61
TIMP4Q99727 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
TIMP4Q99727 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
TIMP4Q99727 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TIMP4Q99727 AC092667.1-201ENST00000434301 2586 ntBASIC18.85■□□□□ 0.61
TIMP4Q99727 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TIMP4Q99727 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 SLC29A4P1-201ENST00000398760 971 ntBASIC18.84■□□□□ 0.61
TIMP4Q99727 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 CYP2T1P-201ENST00000432607 1285 ntBASIC18.84■□□□□ 0.61
TIMP4Q99727 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 AC142086.2-201ENST00000569753 217 ntBASIC18.84■□□□□ 0.61
TIMP4Q99727 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 AC243732.1-201ENST00000612648 864 ntBASIC18.84■□□□□ 0.61
TIMP4Q99727 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.84■□□□□ 0.61
TIMP4Q99727 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
TIMP4Q99727 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.84■□□□□ 0.61
TIMP4Q99727 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.84■□□□□ 0.61
TIMP4Q99727 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
TIMP4Q99727 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TIMP4Q99727 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.84■□□□□ 0.61
TIMP4Q99727 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.83■□□□□ 0.61
TIMP4Q99727 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TIMP4Q99727 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TIMP4Q99727 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TIMP4Q99727 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.83■□□□□ 0.6
TIMP4Q99727 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
TIMP4Q99727 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.83■□□□□ 0.6
TIMP4Q99727 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TIMP4Q99727 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TIMP4Q99727 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.83■□□□□ 0.6
TIMP4Q99727 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TIMP4Q99727 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.82■□□□□ 0.6
TIMP4Q99727 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TIMP4Q99727 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.82■□□□□ 0.6
TIMP4Q99727 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.82■□□□□ 0.6
TIMP4Q99727 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.82■□□□□ 0.6
TIMP4Q99727 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.82■□□□□ 0.6
TIMP4Q99727 AL591742.1-201ENST00000604433 565 ntBASIC18.82■□□□□ 0.6
TIMP4Q99727 OR10C1-204ENST00000622521 1039 ntBASIC18.82■□□□□ 0.6
TIMP4Q99727 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TIMP4Q99727 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms